change secret #70

	name: Docker Image CI

	on: ["push", "workflow_dispatch"]


	jobs:

	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: hadolint/[email protected]
	with:
	dockerfile: Dockerfile

	test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up environment
	run: \|
	echo "BIOMAJ_DIR=$(pwd)" > .env
	echo "BIOMAJ_DATA_DIR=$(pwd)/biomaj" >> .env
	mkdir -p biomaj biomaj/conf biomaj/log biomaj/lock biomaj/db biomaj/process biomaj/cache
	cp test-local/etc/biomaj/conf.d/alu.properties biomaj/conf/
	cp test-local/etc/biomaj/conf.d/local.properties biomaj/conf/
	- name: Validate Docker Compose configuration
	run: \|
	docker compose config -q
	- name: Build Docker image
	run: \|
	docker compose build --no-cache
	- name: Start Docker containers
	run: \|
	docker compose up -d
	- name: Execute test script
	run: \|
	sleep 20
	./docker-test.sh local
	- name: Shut down Docker containers
	run: \|
	docker compose down

	publish:
	runs-on: ubuntu-latest
	if: github.ref == 'refs/heads/master'
	steps:
	- uses: actions/checkout@v4

	- name: Log in to Docker Hub
	uses: docker/login-action@v3
	with:
	username: ${{ secrets.DOCKERHUB_USER }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}

	- name: Extract metadata (tags, labels) for Docker
	id: meta
	uses: docker/metadata-action@v5
	with:
	images: genouest/biomaj-docker

	- name: Build and push Docker image
	uses: docker/build-push-action@v5
	with:
	context: .
	file: ./Dockerfile
	push: true
	tags: ${{ steps.meta.outputs.tags }}
	labels: ${{ steps.meta.outputs.labels }}

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