Provide Precomputed Protein Sequences #31
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improve contig consistency error message
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This PR adds the ability to provide precomputed protein sequences as input, eliminating the need for Binette to perform gene prediction. This feature addresses the request in issue #30.
Usage
A new argument,
--proteins, has been introduced. This should point to a FASTA file containing all predicted proteins for the assembly.Requirements
The provided protein sequences must follow Pyrodigal’s naming convention:
<contigID>_<GeneID>.<contigID>: The name of the contig.<GeneID>: An integer identifying the gene.If a contig extracted from the protein file is not present in the provided contig file, the program will raise an error to ensure consistency between inputs.