improve gh action

.github/workflows/binette_ci.yml

@@ -9,6 +9,9 @@ jobs:
   build:
 
     runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -el {0}
     strategy:
       fail-fast: false
       matrix:
@@ -18,42 +21,7 @@ jobs:
     # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
     - uses: actions/checkout@v3
 
-    # # Setting up miniconda
-    # - uses: conda-incubator/setup-miniconda@v2
-    #   with:
-    #     mamba-version: "*"
-    #     python-version: ${{ matrix.python-version }}
-    #     channels: conda-forge,bioconda,defaults
-    #     activate-environment: test
-
-    # - name: Set up test environment
-    #   shell: bash -l {0}
-    #   run: |
-    #       mamba install -y binette
-
-    # - name: check installation
-    #   shell: bash -l {0}
-    #   run: |
-    #       python --version
-    #       binette --version
-
-    # - uses: actions/checkout@v3
-    # - name: Set up Python ${{ matrix.python-version }}
-    #   uses: actions/setup-python@v3
-    #   with:
-    #     python-version: ${{ matrix.python-version }}
-    # - name: Add conda to system path
-    #   run: |
-    #     # $CONDA is an environment variable pointing to the root of the miniconda directory
-    #     echo $CONDA/bin >> $GITHUB_PATH
-    # - name: Install mamba
-    #   run: |
-    #     conda install -c conda-forge mamba
-    # - name: Install binette dependencies
-    #   run: |
-    #     mamba env update --file binette.yaml --name base
-
-    # Setting up miniconda
+    # Install requirements 
     - uses: conda-incubator/setup-miniconda@v2
       with:
         mamba-version: "*"
@@ -63,7 +31,6 @@ jobs:
         activate-environment: binette
 
     - name: Install binette
-      shell: bash -el {0}
       run: |
         pip install .
         binette -h