add sections in paper

genotoul-bioinfo · Jan 25, 2024 · 8d213eb · 8d213eb
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diff --git a/paper/paper.bib b/paper/paper.bib
@@ -180,3 +180,30 @@ @article{metagWGS_inprep
 
 }
 
+@article{gruning2018bioconda,
+  title={Bioconda: sustainable and comprehensive software distribution for the life sciences},
+  author={Gr{\"u}ning, Bj{\"o}rn and Dale, Ryan and Sj{\"o}din, Andreas and Chapman, Brad A and Rowe, Jillian and Tomkins-Tinch, Christopher H and Valieris, Renan and K{\"o}ster, Johannes and Bioconda Team},
+  journal={Nature methods},
+  volume={15},
+  number={7},
+  pages={475--476},
+  year={2018},
+  publisher={Nature Publishing Group US New York},
+  doi = {10.1038/s41592-018-0046-7},
+}
+
+
+@article{Bioconda:2018,
+  title = {Bioconda: Sustainable and Comprehensive Software Distribution for the Life Sciences},
+  shorttitle = {Bioconda},
+  author = {Gr{\"u}ning, Bj{\"o}rn and Dale, Ryan and Sj{\"o}din, Andreas and Chapman, Brad A. and Rowe, Jillian and {Tomkins-Tinch}, Christopher H. and Valieris, Renan and K{\"o}ster, Johannes},
+  year = {2018},
+  month = jul,
+  journal = {Nature Methods},
+  volume = {15},
+  number = {7},
+  pages = {475--476},
+  publisher = {{Nature Publishing Group}},
+  issn = {1548-7105},
+}
+
diff --git a/paper/paper.md b/paper/paper.md
@@ -45,5 +45,14 @@ Bin completeness and contamination are assessed using CheckM2 [@chklovski2023che
 
 Binette serves as the bin refinement tool within the [metagWGS](https://forgemia.inra.fr/genotoul-bioinfo/metagwgs) metagenomic analysis pipeline [@metagWGS_inprep], providing a robust and faster alternative to the bin refinement module of the metaWRAP pipeline as well as other similar bin refinement tools.
 
+# Availability
+
+Binette is accessible through [PyPI](https://pypi.org/project/Binette/), and a Conda [package](https://anaconda.org/bioconda/binette) can be found in the Bioconda channel [gruning2018bioconda]. The source code for Binette is available on [GitHub](https://github.com/genotoul-bioinfo/binette) under the MIT license. The GitHub repository includes continuous integration tests, test coverage, and employs continuous deployment through GitHub actions.
+
+
+# Acknowledgements
+
+We would like to thank Matthias Zytnicki for his valuable insights and support during the development of the binette algorithm.
+
 
 # References