conda recipe #14
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name: conda recipe | |
# Controls when the workflow will run | |
on: | |
# Triggers the workflow on schedule but only for the default branch (which is master) | |
schedule: | |
- cron: '0 7 5,20 * *' | |
# on: [push] #to any branch | |
# Allows you to run this workflow manually from the Actions tab | |
# workflow_dispatch: | |
# A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
jobs: | |
# This workflow contains a single job called "check_recipe" | |
check_recipe: | |
name: test bioconda recipes on ${{ matrix.os }} with python ${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: ['ubuntu-latest','macos-latest'] | |
python-version: ['3.8'] | |
# Steps represent a sequence of tasks that will be executed as part of the job | |
steps: | |
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
- uses: actions/checkout@v2 | |
# Setting up miniconda | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
mamba-version: "*" | |
python-version: ${{ matrix.python-version }} | |
channels: conda-forge,bioconda,defaults | |
activate-environment: test | |
- name: Set up test environment | |
shell: bash -l {0} | |
run: | | |
mamba install -y binette | |
- name: check installation | |
shell: bash -l {0} | |
run: | | |
python --version | |
binette --version |