Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Non-human WGS Pipeline with Basic QC and Variant Calls (SNVs/Indels) #714

Open
wants to merge 2 commits into
base: master
Choose a base branch
from

Conversation

jasonwalker80
Copy link
Member

Add ploidy to germline_detect_variants and pass along to GATK GenotypeGVCFs and HaplotypeCaller

@jasonwalker80 jasonwalker80 changed the title GATK ploidy input for Germline SNV/Indels Non-human WGS Pipeline with Basic QC and Variant Calls (SNVs/Indels) Jun 18, 2019
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant