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2 changes: 1 addition & 1 deletion documentation/5/.buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 2c4baab60789ed94dfde1315088742e7
config: f03c42cb031d0fa577de64a58a6717cc
tags: 645f666f9bcd5a90fca523b33c5a78b7
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.0"
"version": "3.8.12"
}
},
"nbformat": 4,
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.0"
"version": "3.8.12"
}
},
"nbformat": 4,
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.0"
"version": "3.8.12"
}
},
"nbformat": 4,
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6 changes: 3 additions & 3 deletions documentation/5/_sources/sg_execution_times.rst.txt
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* - Example
- Time
- Mem (MB)
* - :ref:`sphx_glr_userproject_mnist_mb_classifier.py` (``../userproject/mnist_mb_classifier.py``)
* - :ref:`sphx_glr_userproject_mnist_mb_classifier.py` (``..\userproject\mnist_mb_classifier.py``)
- 00:00.000
- 0.0
* - :ref:`sphx_glr_userproject_potjans_microcircuit_pygenn.py` (``../userproject/potjans_microcircuit_pygenn.py``)
* - :ref:`sphx_glr_userproject_potjans_microcircuit.py` (``..\userproject\potjans_microcircuit.py``)
- 00:00.000
- 0.0
* - :ref:`sphx_glr_userproject_superspike_demo.py` (``../userproject/superspike_demo.py``)
* - :ref:`sphx_glr_userproject_superspike_demo.py` (``..\userproject\superspike_demo.py``)
- 00:00.000
- 0.0
24 changes: 0 additions & 24 deletions documentation/5/_sources/source/pygenn.rst.txt
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:undoc-members:
:show-inheritance:

pygenn.libgenn\_cuda\_backend\_dynamic module
---------------------------------------------

.. automodule:: pygenn.libgenn_cuda_backend_dynamic
:members:
:undoc-members:
:show-inheritance:

pygenn.libgenn\_dynamic module
------------------------------

.. automodule:: pygenn.libgenn_dynamic
:members:
:undoc-members:
:show-inheritance:

pygenn.libgenn\_single\_threaded\_cpu\_backend\_dynamic module
--------------------------------------------------------------

.. automodule:: pygenn.libgenn_single_threaded_cpu_backend_dynamic
:members:
:undoc-members:
:show-inheritance:

pygenn.model\_preprocessor module
---------------------------------

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.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "userproject/mnist_mb_classifier.py"
.. "userproject\mnist_mb_classifier.py"
.. LINE NUMBERS ARE GIVEN BELOW.
.. only:: html
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.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "userproject/potjans_microcircuit.py"
.. "userproject\potjans_microcircuit.py"
.. LINE NUMBERS ARE GIVEN BELOW.
.. only:: html
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.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "userproject/superspike_demo.py"
.. "userproject\superspike_demo.py"
.. LINE NUMBERS ARE GIVEN BELOW.
.. only:: html
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2 changes: 1 addition & 1 deletion documentation/5/_static/basic.css
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div.sphinxsidebar {
float: left;
width: 230px;
width: 450px;
margin-left: -100%;
font-size: 90%;
word-wrap: break-word;
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2 changes: 1 addition & 1 deletion documentation/5/_static/classic.css
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}

div.bodywrapper {
margin: 0 0 0 230px;
margin: 0 0 0 450px;
}

div.body {
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4 changes: 2 additions & 2 deletions documentation/5/bibliography.html
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<html lang="en">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>Bibliography &#8212; PyGeNN documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=89b800e6" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=fc041d6f" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
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18 changes: 9 additions & 9 deletions documentation/5/building_networks.html
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<html lang="en">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>Building networks &#8212; PyGeNN documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=89b800e6" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=fc041d6f" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
Expand Down Expand Up @@ -303,13 +303,13 @@ <h3>Synapse populations<a class="headerlink" href="#synapse-populations" title="
<dt class="sig sig-object py">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">pygenn.</span></span><span class="sig-name descname"><span class="pre">SynapseMatrixType</span></span></dt>
<dd><p>Members:</p>
<p>DENSE</p>
<p>DENSE_PROCEDURALG</p>
<p>BITMASK</p>
<p>SPARSE</p>
<p>PROCEDURAL</p>
<p>PROCEDURAL_KERNELG</p>
<p>TOEPLITZ</p>
<p>DENSE :</p>
<p>DENSE_PROCEDURALG :</p>
<p>BITMASK :</p>
<p>SPARSE :</p>
<p>PROCEDURAL :</p>
<p>PROCEDURAL_KERNELG :</p>
<p>TOEPLITZ :</p>
</dd></dl>

<p><a class="reference internal" href="source/pygenn.html#pygenn.SynapseMatrixType.DENSE" title="pygenn.SynapseMatrixType.DENSE"><code class="xref py py-attr docutils literal notranslate"><span class="pre">pygenn.SynapseMatrixType.DENSE</span></code></a> and <code class="xref py py-attr docutils literal notranslate"><span class="pre">pygenn.SynapseMatrixType.DENSE_PROCEDURAL</span></code>
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4 changes: 2 additions & 2 deletions documentation/5/custom_models.html
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<html lang="en">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>Custom models &#8212; PyGeNN documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=89b800e6" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=fc041d6f" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
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76 changes: 12 additions & 64 deletions documentation/5/genindex.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Index &#8212; PyGeNN documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=89b800e6" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=fc041d6f" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
Expand Down Expand Up @@ -105,20 +105,14 @@ <h2 id="B">B</h2>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.SynapseGroup.back_prop_delay_steps">back_prop_delay_steps (pygenn.SynapseGroup property)</a>
</li>
<li><a href="source/pygenn.html#pygenn.cuda_backend.Backend">Backend (class in pygenn.cuda_backend)</a>

<ul>
<li><a href="source/pygenn.html#pygenn.single_threaded_cpu_backend.Backend">(class in pygenn.single_threaded_cpu_backend)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.GeNNModel.backend_name">backend_name (pygenn.GeNNModel property)</a>
</li>
<li><a href="source/pygenn.html#pygenn.VarAccessDim.BATCH">BATCH (pygenn.VarAccessDim attribute)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.init_var_snippets.Binomial">Binomial() (in module pygenn.init_var_snippets)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.SynapseMatrixConnectivity.BITMASK">BITMASK (pygenn.SynapseMatrixConnectivity attribute)</a>

<ul>
Expand All @@ -145,12 +139,6 @@ <h2 id="C">C</h2>

<ul>
<li><a href="source/pygenn.html#pygenn.init_toeplitz_connectivity_snippets.Conv2D">(in module pygenn.init_toeplitz_connectivity_snippets)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.cuda_backend.create_backend">create_backend() (in module pygenn.cuda_backend)</a>

<ul>
<li><a href="source/pygenn.html#pygenn.single_threaded_cpu_backend.create_backend">(in module pygenn.single_threaded_cpu_backend)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.create_current_source_model">create_current_source_model() (in module pygenn)</a>
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</li>
<li><a href="source/pygenn.html#pygenn.create_weight_update_model">create_weight_update_model() (in module pygenn)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.create_wu_egp_ref">create_wu_egp_ref() (in module pygenn)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.create_wu_post_var_ref">create_wu_post_var_ref() (in module pygenn)</a>
</li>
<li><a href="source/pygenn.html#pygenn.create_wu_pre_var_ref">create_wu_pre_var_ref() (in module pygenn)</a>
Expand Down Expand Up @@ -338,11 +326,11 @@ <h2 id="G">G</h2>
<li><a href="source/pygenn.html#pygenn.SynapseGroup.get_ps_var_location">get_ps_var_location() (pygenn.SynapseGroup method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.runtime.Runtime.get_recorded_post_spike_events">get_recorded_post_spike_events() (pygenn.runtime.Runtime method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.runtime.Runtime.get_recorded_pre_spike_events">get_recorded_pre_spike_events() (pygenn.runtime.Runtime method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.runtime.Runtime.get_recorded_pre_spike_events">get_recorded_pre_spike_events() (pygenn.runtime.Runtime method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.runtime.Runtime.get_recorded_spikes">get_recorded_spikes() (pygenn.runtime.Runtime method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.model_preprocessor.get_snippet">get_snippet() (in module pygenn.model_preprocessor)</a>
Expand All @@ -361,14 +349,6 @@ <h2 id="G">G</h2>
<li><a href="source/pygenn.html#pygenn.CustomConnectivityUpdate.get_var_location">(pygenn.CustomConnectivityUpdate method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.NeuronGroup.get_var_location">(pygenn.NeuronGroup method)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.genn_groups.CustomConnectivityUpdateMixin.get_var_values">get_var_values() (pygenn.genn_groups.CustomConnectivityUpdateMixin method)</a>

<ul>
<li><a href="source/pygenn.html#pygenn.genn_groups.CustomUpdateWUMixin.get_var_values">(pygenn.genn_groups.CustomUpdateWUMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.get_var_values">(pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.SynapseGroup.get_wu_post_var_location">get_wu_post_var_location() (pygenn.SynapseGroup method)</a>
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</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.SynapseGroup.narrow_sparse_ind_enabled">narrow_sparse_ind_enabled (pygenn.SynapseGroup property)</a>
</li>
<li><a href="source/pygenn.html#pygenn.cuda_backend.Runtime.nccl_generate_unique_id">nccl_generate_unique_id() (pygenn.cuda_backend.Runtime method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.cuda_backend.Runtime.nccl_init_communicator">nccl_init_communicator() (pygenn.cuda_backend.Runtime method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.cuda_backend.Runtime.nccl_unique_id">nccl_unique_id (pygenn.cuda_backend.Runtime property)</a>
</li>
<li><a href="source/pygenn.html#pygenn.GeNNModel.neuron_update_time">neuron_update_time (pygenn.GeNNModel property)</a>

Expand Down Expand Up @@ -751,38 +725,24 @@ <h2 id="P">P</h2>
<li><a href="source/pygenn.html#pygenn.SynapseGroup.ps_initialiser">ps_initialiser (pygenn.SynapseGroup property)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.pull_connectivity_from_device">pull_connectivity_from_device() (pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.GroupMixin.pull_extra_global_param_from_device">pull_extra_global_param_from_device() (pygenn.genn_groups.GroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.model_preprocessor.ArrayBase.pull_from_device">pull_from_device() (pygenn.model_preprocessor.ArrayBase method)</a>

<ul>
<li><a href="source/pygenn.html#pygenn.runtime.ArrayBase.pull_from_device">(pygenn.runtime.ArrayBase method)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.pull_in_syn_from_device">pull_in_syn_from_device() (pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.pull_psm_extra_global_param_from_device">pull_psm_extra_global_param_from_device() (pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.GeNNModel.pull_recording_buffers_from_device">pull_recording_buffers_from_device() (pygenn.GeNNModel method)</a>

<ul>
<li><a href="source/pygenn.html#pygenn.runtime.Runtime.pull_recording_buffers_from_device">(pygenn.runtime.Runtime method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.runtime.ArrayBase.pull_slice_1d_from_device">pull_slice_1d_from_device() (pygenn.runtime.ArrayBase method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.GroupMixin.pull_var_from_device">pull_var_from_device() (pygenn.genn_groups.GroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.push_connectivity_to_device">push_connectivity_to_device() (pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.GroupMixin.push_extra_global_param_to_device">push_extra_global_param_to_device() (pygenn.genn_groups.GroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.push_in_syn_to_device">push_in_syn_to_device() (pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.push_psm_extra_global_param_to_device">push_psm_extra_global_param_to_device() (pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.runtime.ArrayBase.push_slice_1d_to_device">push_slice_1d_to_device() (pygenn.runtime.ArrayBase method)</a>
</li>
Expand All @@ -792,8 +752,6 @@ <h2 id="P">P</h2>
<li><a href="source/pygenn.html#pygenn.runtime.ArrayBase.push_to_device">(pygenn.runtime.ArrayBase method)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.genn_groups.GroupMixin.push_var_to_device">push_var_to_device() (pygenn.genn_groups.GroupMixin method)</a>
</li>
<li>
pygenn

Expand Down Expand Up @@ -962,12 +920,8 @@ <h2 id="R">R</h2>
</li>
<li><a href="source/pygenn.html#pygenn.neuron_models.RulkovMap">RulkovMap() (in module pygenn.neuron_models)</a>
</li>
<li><a href="source/pygenn.html#pygenn.cuda_backend.Runtime">Runtime (class in pygenn.cuda_backend)</a>

<ul>
<li><a href="source/pygenn.html#pygenn.runtime.Runtime">(class in pygenn.runtime)</a>
<li><a href="source/pygenn.html#pygenn.runtime.Runtime">Runtime (class in pygenn.runtime)</a>
</li>
</ul></li>
</ul></td>
</tr></table>

Expand Down Expand Up @@ -1010,12 +964,6 @@ <h2 id="S">S</h2>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.SynapseGroupMixin.set_sparse_connections">set_sparse_connections() (pygenn.genn_groups.SynapseGroupMixin method)</a>
</li>
<li><a href="source/pygenn.html#pygenn.model_preprocessor.ExtraGlobalParameter.set_values">set_values() (pygenn.model_preprocessor.ExtraGlobalParameter method)</a>

<ul>
<li><a href="source/pygenn.html#pygenn.model_preprocessor.VariableBase.set_values">(pygenn.model_preprocessor.VariableBase method)</a>
</li>
</ul></li>
<li><a href="source/pygenn.html#pygenn.CurrentSource.set_var_location">set_var_location() (pygenn.CurrentSource method)</a>

<ul>
Expand All @@ -1042,10 +990,10 @@ <h2 id="S">S</h2>
</ul></li>
<li><a href="source/pygenn.html#pygenn.SynapseGroup.sparse_connectivity_initialiser">sparse_connectivity_initialiser (pygenn.SynapseGroup property)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.SynapseGroup.sparse_connectivity_location">sparse_connectivity_location (pygenn.SynapseGroup property)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/pygenn.html#pygenn.NeuronGroup.spike_event_recording_enabled">spike_event_recording_enabled (pygenn.NeuronGroup property)</a>
</li>
<li><a href="source/pygenn.html#pygenn.genn_groups.NeuronGroupMixin.spike_recording_data">spike_recording_data (pygenn.genn_groups.NeuronGroupMixin property)</a>
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4 changes: 2 additions & 2 deletions documentation/5/index.html
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<html lang="en">
<head>
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