Add docker-build action to take advantage of caching and use shardi…

…ng (#105)

* Update nf-test to 0.9.0-rc1

* Add `--shard` option

* Update to nf-test 0.9.0-rc2

* Add ci flag

* Cleanup obsolete snapshots and add missing snapshots

* Add docker action and use gh cache

* Add docker action to build image

* Add setup-buildx action

* Add load true option

* Remove docker build from static tests

* Delete lukas.csv

* Remove static tests

* Delete run-tests.sh

* Update nf-test URL

* Update ci-tests.yml

---------

Co-authored-by: Sebastian Schoenherr <[email protected]>

.github/workflows/ci-tests.yml

@@ -4,9 +4,12 @@ on: [push, pull_request]
 
 jobs:
 
-  build:
+  test:
 
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        shard: [1, 2, 3, 4, 5]
 
     steps:
       - name: Checkout
@@ -18,21 +21,28 @@ jobs:
           java-version: '11'
           distribution: 'adopt'
 
-      - name: Setup Nextflow ${{ matrix.nextflow }}
+      - name: Setup Nextflow
         uses: nf-core/setup-nextflow@v1
         with:
           version: "latest-edge"
 
       - name: Install nf-test
         run: |
-          wget -qO- https://code.askimed.com/install/nf-test | bash
+          wget -qO- get.nf-test.com | bash  -s 0.9.0-rc2
           sudo mv nf-test /usr/local/bin/
-          
-      - name: Build Docker 
-        run:  docker build -t genepi/nf-gwas .
-
-      - name: Run Tests 
-        run:  nf-test test
-
-      - name: Run static tests with development profile
-        run:  ./run-tests.sh
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Build Docker
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          push: false
+          load: true
+          tags: "genepi/nf-gwas"
+          cache-from: type=gha          
+          cache-to: type=gha,mode=max
+
+      - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }})
+        run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }}