Put HMMBase in extension of HMMTest

gdalle · Sep 29, 2024 · 1dc2dfb · 1dc2dfb
1 parent a8b048a
commit 1dc2dfb
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Showing 4 changed files with 30 additions and 9 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -3,7 +3,7 @@ on:
   push:
     branches:
       - main
-    tags: ['*']
+    tags: ["*"]
   pull_request:
 concurrency:
   # Skip intermediate builds: always.
@@ -18,10 +18,13 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1.9'
-          - '1'
-        os:
-          - ubuntu-latest
+          - "1.9"
+          - "1"
+        test_suite:
+          - "normal"
+          - "hmmbase"
+    env:
+      JULIA_HMM_TEST_SUITE: ${{ matrix.test_suite }}
     steps:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@v2
@@ -36,4 +39,4 @@ jobs:
         with:
           files: lcov.info
           token: ${{ secrets.CODECOV_TOKEN }}
-          fail_ci_if_error: true
+          fail_ci_if_error: true
diff --git a/libs/HMMTest/Project.toml b/libs/HMMTest/Project.toml
@@ -5,9 +5,14 @@ version = "0.1.0"
 
 [deps]
 BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
-HMMBase = "b2b3ca75-8444-5ffa-85e6-af70e2b64fe7"
 HiddenMarkovModels = "84ca31d5-effc-45e0-bfda-5a68cd981f47"
 JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[weakdeps]
+HMMBase = "b2b3ca75-8444-5ffa-85e6-af70e2b64fe7"
+
+[extensions]
+HMMTestHMMBaseExt = "HMMBase"
diff --git a/libs/HMMTest/src/hmmbase.jl → libs/HMMTest/ext/HMMTestHMMBaseExt.jl b/libs/HMMTest/src/hmmbase.jl → libs/HMMTest/ext/HMMTestHMMBaseExt.jl
@@ -1,5 +1,14 @@
+module HMMTestHMMBaseExt
 
-function test_identical_hmmbase(
+using HiddenMarkovModels
+import HiddenMarkovModels as HMMs
+using HMMBase: HMMBase
+using HMMTest: HMMTest
+using Random: AbstractRNG
+using Statistics: mean
+using Test: @test, @testset, @test_broken
+
+function HMMTest.test_identical_hmmbase(
     rng::AbstractRNG,
     hmm::AbstractHMM,
     T::Integer;
@@ -54,3 +63,6 @@ function test_identical_hmmbase(
         end
     end
 end
+
+
+end
diff --git a/libs/HMMTest/src/HMMTest.jl b/libs/HMMTest/src/HMMTest.jl
@@ -9,6 +9,8 @@ using Random: AbstractRNG
 using Statistics: mean
 using Test: @test, @testset, @test_broken
 
+function test_identical_hmmbase end  # in extension
+
 export transpose_hmm
 export test_equal_hmms, test_coherent_algorithms
 export test_identical_hmmbase
@@ -18,7 +20,6 @@ export test_type_stability
 include("utils.jl")
 include("coherence.jl")
 include("allocations.jl")
-include("hmmbase.jl")
 include("jet.jl")
 
 end