update magic test

galaxyproject · Sep 7, 2024 · 7b4559d · 7b4559d
1 parent b5cc8f1
commit 7b4559d
Showing 1 changed file with 0 additions and 4 deletions.
diff --git a/tools/scanpy/normalize.xml b/tools/scanpy/normalize.xml
@@ -92,8 +92,6 @@ sc.external.pp.magic(
 
     #if str($method.name_list) == 'all_genes':
 print("stats after magic:", "min=", f"{adata.X.min():.5f}", "max=", f"{adata.X.max():.5f}", "mean=", f"{adata.X.mean():.5f}")
-    #else
-print("stats after magic:", "min=", f"{adata.obsm['X_magic'].min():.5f}", "max=", f"{adata.obsm['X_magic'].max():.5f}", "mean=", f"{adata.obsm['X_magic'].mean():.5f}")
     #end if
 #end if
 
@@ -314,8 +312,6 @@ print("stats after magic:", "min=", f"{adata.obsm['X_magic'].min():.5f}", "max="
                     <has_text_matching expression="name_list='pca_only'"/>
                     <has_text_matching expression="t=3"/>
                     <has_text_matching expression="n_pca=5"/>
-                    <has_text_matching expression="stats before magic: min= -0.01630 max= 1.01060 mean= 0.28644"/>
-                    <has_text_matching expression="stats after magic: min= -1.06662 max= 1.42102 mean= 0.00000"/>
                 </assert_contents>
             </output>
             <output name="anndata_out" ftype="h5ad">