Rename to workflow_test_on_invocation

docs/commands.rst

@@ -67,6 +67,6 @@ documentation describes these commands.
 .. include:: commands/workflow_edit.rst
 .. include:: commands/workflow_job_init.rst
 .. include:: commands/workflow_lint.rst
-.. include:: commands/workflow_test_check.rst
 .. include:: commands/workflow_test_init.rst
+.. include:: commands/workflow_test_on_invocation.rst
 .. include:: commands/workflow_upload.rst

docs/commands/autoupdate.rst

@@ -35,12 +35,6 @@ Auto-update tool requirements by checking against Conda and updating if newer ve
       --update_test_data              Update test-data directory with job outputs
                                       (normally written to directory
                                       --job_output_files if specified.)
-      --paste_test_data_paths / --no_paste_test_data_paths
-                                      By default Planemo will use or not use
-                                      Galaxy's path paste option to load test data
-                                      into a history based on the engine type it is
-                                      targeting. This can override the logic to
-                                      explicitly enable or disable path pasting.
       --test_output PATH              Output test report (HTML - for humans)
                                       defaults to tool_test_output.html.
       --test_output_text PATH         Output test report (Basic text - for display

docs/commands/run.rst

@@ -215,12 +215,6 @@ Planemo command for running tools and jobs.
       --update_test_data              Update test-data directory with job outputs
                                       (normally written to directory
                                       --job_output_files if specified.)
-      --paste_test_data_paths / --no_paste_test_data_paths
-                                      By default Planemo will use or not use
-                                      Galaxy's path paste option to load test data
-                                      into a history based on the engine type it is
-                                      targeting. This can override the logic to
-                                      explicitly enable or disable path pasting.
       --test_output PATH              Output test report (HTML - for humans)
                                       defaults to tool_test_output.html.
       --test_output_text PATH         Output test report (Basic text - for display

docs/commands/shed_test.rst

@@ -171,12 +171,6 @@ install these artifacts, and run the tool tests for these commands.
       --update_test_data              Update test-data directory with job outputs
                                       (normally written to directory
                                       --job_output_files if specified.)
-      --paste_test_data_paths / --no_paste_test_data_paths
-                                      By default Planemo will use or not use
-                                      Galaxy's path paste option to load test data
-                                      into a history based on the engine type it is
-                                      targeting. This can override the logic to
-                                      explicitly enable or disable path pasting.
       --test_output PATH              Output test report (HTML - for humans)
                                       defaults to tool_test_output.html.
       --test_output_text PATH         Output test report (Basic text - for display

docs/commands/test.rst

@@ -178,12 +178,6 @@ please careful and do not try this against production Galaxy instances.
       --update_test_data              Update test-data directory with job outputs
                                       (normally written to directory
                                       --job_output_files if specified.)
-      --paste_test_data_paths / --no_paste_test_data_paths
-                                      By default Planemo will use or not use
-                                      Galaxy's path paste option to load test data
-                                      into a history based on the engine type it is
-                                      targeting. This can override the logic to
-                                      explicitly enable or disable path pasting.
       --test_output PATH              Output test report (HTML - for humans)
                                       defaults to tool_test_output.html.
       --test_output_text PATH         Output test report (Basic text - for display

docs/planemo.commands.rst

@@ -500,18 +500,18 @@ planemo.commands.cmd\_workflow\_lint module
    :undoc-members:
    :show-inheritance:
 
-planemo.commands.cmd\_workflow\_test\_check module
---------------------------------------------------
+planemo.commands.cmd\_workflow\_test\_init module
+-------------------------------------------------
 
-.. automodule:: planemo.commands.cmd_workflow_test_check
+.. automodule:: planemo.commands.cmd_workflow_test_init
    :members:
    :undoc-members:
    :show-inheritance:
 
-planemo.commands.cmd\_workflow\_test\_init module
--------------------------------------------------
+planemo.commands.cmd\_workflow\_test\_on\_invocation module
+-----------------------------------------------------------
 
-.. automodule:: planemo.commands.cmd_workflow_test_init
+.. automodule:: planemo.commands.cmd_workflow_test_on_invocation
    :members:
    :undoc-members:
    :show-inheritance:

planemo/commands/cmd_workflow_test_check.py → planemo/commands/cmd_workflow_test_on_invocation.py

@@ -11,7 +11,7 @@
 from planemo.test.results import StructuredData
 
 
-@click.command("workflow_test_check")
+@click.command("workflow_test_on_invocation")
 @options.optional_tools_arg(multiple=False, allow_uris=False, metavar="TEST DEFINITION")
 @options.required_workflow_arg()
 @options.galaxy_url_option(required=True)

tests/test_cmds_with_workflow_id.py

@@ -82,8 +82,8 @@ def test_serve_workflow(self):
             test_index = 1
             invocation_id = output["tests"][test_index]["data"]["invocation_details"]["details"]["invocation_id"]
             test_path = os.path.join(TEST_DATA_DIR, "wf11-remote.gxwf-test.yml")
-            workflow_test_check_command = [
-                "workflow_test_check",
+            workflow_test_on_invocation_command = [
+                "workflow_test_on_invocation",
                 "--galaxy_url",
                 f"http://localhost:{self._port}",
                 "--galaxy_user_key",
@@ -93,4 +93,4 @@ def test_serve_workflow(self):
                 test_path,
                 invocation_id,
             ]
-            self._check_exit_code(workflow_test_check_command, exit_code=0)
+            self._check_exit_code(workflow_test_on_invocation_command, exit_code=0)