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Fix up tutorial test
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mvdbeek committed Oct 28, 2023
1 parent df01218 commit 6ff0811
Showing 1 changed file with 18 additions and 20 deletions.
38 changes: 18 additions & 20 deletions tests/test_training_tutorial.py
Original file line number Diff line number Diff line change
Expand Up @@ -327,32 +327,30 @@ def test_tutorial_create_hands_on_tutorial() -> None:
"""Test :func:`planemo.training.tutorial.tutorial.create_hands_on_tutorial`."""
tuto = Tutorial(training=training, topic=topic)
os.makedirs(tuto.wf_dir)
# with init_wf_id and no Galaxy URL
tuto.init_wf_id = "ID"
tuto.training.galaxy_url = None
with pytest.raises(Exception, match="No Galaxy URL given"):
tuto.create_hands_on_tutorial(CTX)
# with init_wf_id and no Galaxy API key
tuto.init_wf_id = "ID"
tuto.training.galaxy_url = f"http://{KWDS['host']}:{KWDS['port']}"
tuto.training.galaxy_api_key = None
with pytest.raises(Exception, match="No API key to access the given Galaxy instance"):
tuto.create_hands_on_tutorial(CTX)
# with init_wf_id
with engine_context(CTX, **KWDS) as galaxy_engine:
assert isinstance(galaxy_engine, LocalManagedGalaxyEngine)
with galaxy_engine.ensure_runnables_served([RUNNABLE]) as config:
# fail without Galaxy URL
tuto.init_wf_id = "ID"
tuto.training.galaxy_url = None
with pytest.raises(Exception, match="No Galaxy URL given"):
tuto.create_hands_on_tutorial(CTX)
# fail without Galaxy API key
tuto.training.galaxy_url = f"http://{KWDS['host']}:{KWDS['port']}"
tuto.init_wf_id = config.workflow_id(WF_FP)
with pytest.raises(Exception, match="Workflow is not owned by or shared with current user"):
tuto.create_hands_on_tutorial(CTX)
# pass with API key
tuto.training.galaxy_api_key = config.user_api_key
tuto.create_hands_on_tutorial(CTX)
assert os.path.exists(tuto.tuto_fp)
os.remove(tuto.tuto_fp)
# with init_wf_fp
tuto.init_wf_id = None
tuto.init_wf_fp = WF_FP
tuto.create_hands_on_tutorial(CTX)
assert os.path.exists(tuto.tuto_fp)
shutil.rmtree("topics")
assert os.path.exists(tuto.tuto_fp)
os.remove(tuto.tuto_fp)
# with init_wf_fp
tuto.init_wf_id = None
tuto.init_wf_fp = WF_FP
tuto.create_hands_on_tutorial(CTX)
assert os.path.exists(tuto.tuto_fp)
shutil.rmtree("topics")


@skip_if_environ("PLANEMO_SKIP_GALAXY_TESTS")
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