Make test reports more resilient to failing invocations #1700
Workflow file for this run
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name: Python CI | |
on: [push, pull_request] | |
env: | |
PLANEMO_ENABLE_POSTGRES_TESTS: 1 | |
PLANEMO_SKIP_GALAXY_CWL_TESTS: 1 | |
PLANEMO_TEST_WORKFLOW_RUN_PROFILE: 1 | |
PGPASSWORD: postgres | |
PGHOST: localhost | |
GIT_AUTHOR_NAME: planemo | |
GIT_AUTHOR_EMAIL: [email protected] | |
GIT_COMMITTER_NAME: planemo | |
GIT_COMMITTER_EMAIL: [email protected] | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
timeout-minutes: 100 | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ['3.7'] | |
tox-action: | |
- lint | |
- lint_docs | |
- mypy | |
- unit-quick | |
#- unit-diagnostic-servebasic | |
#- unit-diagnostic-servebasic-gx-2005 | |
#- unit-diagnostic-servebasic-gx-master | |
- unit-diagnostic-servebasic-gx-dev | |
#- unit-diagnostic-servetraining | |
#- unit-diagnostic-servecmd | |
#- unit-diagnostic-trainingwfcmd | |
- unit-nonredundant-noclientbuild-noshed-gx-2105 | |
- unit-nonredundant-noclientbuild-noshed-gx-2109 | |
- unit-nonredundant-noclientbuild-noshed-gx-dev | |
- unit-nonredundant-noclientbuild-noshed-nogx | |
- unit-diagnostic-serveclientcmd | |
include: | |
- python-version: '3.11' | |
tox-action: lint | |
- python-version: '3.11' | |
tox-action: mypy | |
- python-version: '3.11' | |
tox-action: unit-quick | |
services: | |
postgres: | |
image: postgres:10.8 | |
env: | |
POSTGRES_USER: postgres | |
POSTGRES_PASSWORD: postgres | |
POSTGRES_DB: postgres | |
ports: | |
- 5432:5432 | |
# needed because the postgres container does not provide a healthcheck | |
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 1 | |
submodules: true | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Test psql | |
run: | | |
psql --tuples-only --username postgres -P pager=off --list | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools | |
python -m pip install tox coveralls | |
- name: Checkout system space | |
run: | | |
df | |
- name: Test with tox | |
run: | | |
TOXENV=$(echo $TOXENV | sed 's/\.//') tox | |
env: | |
TOXENV: py${{ matrix.python-version }}-${{ matrix.tox-action }} | |
deploy: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 1 | |
submodules: true | |
- uses: actions/setup-node@v3 | |
with: | |
node-version: '18.12.1' | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.7' | |
- name: Install dependencies | |
run: | | |
python3 -m pip install --upgrade pip setuptools | |
python3 -m pip install --upgrade twine wheel | |
- name: Create and check packages | |
run: | | |
make dist | |
- name: Publish to PyPI | |
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
uses: pypa/gh-action-pypi-publish@release/v1 | |
with: | |
password: ${{ secrets.pypi_password }} |