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Merge pull request #46 from bernt-matthias/topic/pin-planemo
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pin planemo
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mvdbeek authored Jan 29, 2024
2 parents ac98dd7 + 18bf819 commit 210690b
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3 changes: 3 additions & 0 deletions .github/workflows/monitor.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ on:
- cron: "0 0 * * *"
env:
GITHUB_USER: dockerhub-toolshed
PLANEMO_VERSION: planemo==0.75.18
jobs:
monitor:
name: Run planemo monitor
Expand All @@ -24,6 +25,8 @@ jobs:
- uses: actions/setup-python@v1
with:
python-version: ${{ matrix.python-version }}
- name: Install planemo
run: pip install PyGithub ${{ env.PLANEMO_VERSION }}
- name: Set github user
run: |
git config --global user.email "[email protected]"
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11 changes: 0 additions & 11 deletions monitor.sh
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@@ -1,16 +1,5 @@
#!/bin/bash

: ${PLANEMO_TARGET:="planemo==0.74.19"}

if [ ! -f .venv ]; then
python -m venv .venv
. .venv/bin/activate
pip install -U pip
pip install PyGithub
git clone --recursive https://github.com/galaxyproject/planemo && pip install planemo/
# pip install "$PLANEMO_TARGET"
fi

planemo conda_init

sort -R $1 | while read repository
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