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prune docker containers at the start of the loop
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otherwise the 1st job does not profit from this
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bernt-matthias committed Jul 17, 2023
1 parent dc1e296 commit 5208067
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion planemo_ci_actions.sh
Original file line number Diff line number Diff line change
Expand Up @@ -157,6 +157,7 @@ if [ "$MODE" == "test" ]; then
mkdir -p json_output
touch .tt_biocontainer_skip
while read -r -a TOOL_GROUP; do
docker system prune --all --force --volumes || true
# Check if any of the lines in .tt_biocontainer_skip is a substring of $TOOL_GROUP
if echo "${TOOL_GROUP[@]}" | grep -qf .tt_biocontainer_skip; then
PLANEMO_OPTIONS=()
Expand All @@ -168,7 +169,6 @@ if [ "$MODE" == "test" ]; then
fi
json=$(mktemp -u -p json_output --suff .json)
PIP_QUIET=1 planemo test "${PLANEMO_OPTIONS[@]}" "${PLANEMO_TEST_OPTIONS[@]}" --test_output_json "$json" "${TOOL_GROUP[@]}" "${ADDITIONAL_PLANEMO_OPTIONS[@]}" || true
docker system prune --all --force --volumes || true
done < tool_list_chunk.txt

if [ ! -s tool_list_chunk.txt ]; then
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