[WIP] Implement Sample Sheets

client/package.json

@@ -45,6 +45,8 @@
     "@types/jest": "^29.5.12",
     "@vueuse/core": "^10.5.0",
     "@vueuse/math": "^10.9.0",
+    "ag-grid-community": "^30",
+    "ag-grid-vue": "^30",
     "assert": "^2.1.0",
     "axios": "^1.6.2",
     "babel-runtime": "^6.26.0",
@@ -106,11 +108,13 @@
     "vega-embed": "^6.26.0",
     "vega-lite": "^5.21.0",
     "vue": "^2.7.14",
+    "vue-class-component": "^7.2.6",
     "vue-echarts": "^7.0.3",
     "vue-infinite-scroll": "^2.0.2",
     "vue-multiselect": "^2.1.7",
     "vue-observe-visibility": "^1.0.0",
     "vue-prismjs": "^1.2.0",
+    "vue-property-decorator": "^9.1.2",
     "vue-router": "^3.6.5",
     "vue-rx": "^6.2.0",
     "vue-virtual-scroll-list": "^2.3.5",

client/src/api/datasetCollections.ts

@@ -1,4 +1,12 @@
-import { type CollectionEntry, type DCESummary, GalaxyApi, type HDCADetailed, type HDCASummary, isHDCA } from "@/api";
+import {
+    type CollectionEntry,
+    type components,
+    type DCESummary,
+    GalaxyApi,
+    type HDCADetailed,
+    type HDCASummary,
+    isHDCA,
+} from "@/api";
 import { rethrowSimple } from "@/utils/simple-error";
 
 const DEFAULT_LIMIT = 50;
@@ -76,3 +84,44 @@ export async function fetchElementsFromCollection(params: {
         limit: params.limit ?? DEFAULT_LIMIT,
     });
 }
+
+export type CollectionElementIdentifiers = components["schemas"]["CollectionElementIdentifier"][];
+export type CreateNewCollectionPayload = components["schemas"]["CreateNewCollectionPayload"];
+
+export type NewCollectionOptions = {
+    name: string;
+    element_identifiers: CollectionElementIdentifiers;
+    collection_type: string;
+    history_id: string;
+    copy_elements?: boolean;
+    hide_source_items?: boolean;
+};
+
+export function createCollectionPayload(options: NewCollectionOptions): CreateNewCollectionPayload {
+    return {
+        name: options.name,
+        history_id: options.history_id,
+        element_identifiers: options.element_identifiers,
+        collection_type: options.collection_type,
+        instance_type: "history",
+        fields: "auto",
+        copy_elements: options.copy_elements || true,
+        hide_source_items: options.hide_source_items || true,
+    };
+}
+
+export async function createHistoryDatasetCollectionInstanceSimple(options: NewCollectionOptions) {
+    const payload = createCollectionPayload(options);
+    return createHistoryDatasetCollectionInstanceFull(payload);
+}
+
+export async function createHistoryDatasetCollectionInstanceFull(payload: CreateNewCollectionPayload) {
+    const { data, error } = await GalaxyApi().POST("/api/dataset_collections", {
+        body: payload,
+    });
+
+    if (error) {
+        rethrowSimple(error);
+    }
+    return data;
+}

client/src/api/datasets.ts

@@ -67,6 +67,7 @@ export async function copyDataset(
             // TODO: Investigate. These should be optional, but the API requires explicit null values?
             type,
             copy_elements: null,
+            fields: null,
             hide_source_items: null,
             instance_type: null,
         },

client/src/api/index.ts

@@ -312,4 +312,8 @@ export type ObjectExportTaskResponse = components["schemas"]["ObjectExportTaskRe
 export type ExportObjectRequestMetadata = components["schemas"]["ExportObjectRequestMetadata"];
 export type ExportObjectResultMetadata = components["schemas"]["ExportObjectResultMetadata"];
 
+export type SampleSheetColumnDefinition = components["schemas"]["SampleSheetColumnDefinitionModel"];
+export type SampleSheetColumnDefinitionType = SampleSheetColumnDefinition["type"];
+export type SampleSheetColumnDefinitions = SampleSheetColumnDefinition[] | null;
+
 export type AsyncTaskResultSummary = components["schemas"]["AsyncTaskResultSummary"];