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Fix auto-detect metadata from Edit Dataset Attributes panel #19025

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merged 2 commits into from
Oct 26, 2024

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davelopez
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I assume this was a leftover from #18626 since the overwrite parameter is now forced to True:

Fixes:

ERROR    galaxy.web.framework.decorators:decorators.py:361 Uncaught exception in exposed API method:
Traceback (most recent call last):
  File "/home/dlopez/dev/galaxy/lib/galaxy/web/framework/decorators.py", line 346, in decorator
    rval = func(self, trans, *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/dlopez/dev/galaxy/lib/galaxy/webapps/galaxy/controllers/dataset.py", line 371, in set_edit
    job, *_ = trans.app.datatypes_registry.set_external_metadata_tool.tool_action.execute(
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: SetMetadataToolAction.execute() got an unexpected keyword argument 'overwrite'

Includes a selenium test.

How to test the changes?

  • I've included appropriate automated tests.
  • This is a refactoring of components with existing test coverage.
  • Instructions for manual testing are as follows:
    • Click on Edit attributes on any dataset
    • Go to Datatypes tab
    • Click Auto-detect button
    • Observe there is no error

License

  • I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

@davelopez
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Test failures unrelated

@davelopez davelopez force-pushed the fix_auto_detect_metadata branch from d1e69c1 to 746f4c0 Compare October 25, 2024 10:43
@davelopez davelopez requested a review from a team October 25, 2024 13:28
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@bgruening bgruening left a comment

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Thanks @davelopez

@bgruening bgruening merged commit 17be124 into galaxyproject:dev Oct 26, 2024
56 checks passed
@davelopez davelopez deleted the fix_auto_detect_metadata branch October 28, 2024 08:22
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2 participants