Refactor Workflow API routes - Part 3

lib/galaxy/schema/schema.py

@@ -23,7 +23,6 @@
     BeforeValidator,
     ConfigDict,
     Field,
-    Json,
     model_validator,
     RootModel,
     UUID4,
@@ -2277,42 +2276,6 @@ class StoredWorkflowSummary(Model, WithModelClass):
     )
 
 
-class WorkflowInput(Model):
-    label: Optional[str] = Field(
-        ...,
-        title="Label",
-        description="Label of the input.",
-    )
-    value: Optional[Any] = Field(
-        ...,
-        title="Value",
-        description="TODO",
-    )
-    uuid: Optional[UUID4] = Field(
-        ...,
-        title="UUID",
-        description="Universal unique identifier of the input.",
-    )
-
-
-class WorkflowOutput(Model):
-    label: Optional[str] = Field(
-        None,
-        title="Label",
-        description="Label of the output.",
-    )
-    output_name: str = Field(
-        ...,
-        title="Output Name",
-        description="The name assigned to the output.",
-    )
-    uuid: Optional[UUID4] = Field(
-        None,
-        title="UUID",
-        description="Universal unique identifier of the output.",
-    )
-
-
 class InputStep(Model):
     source_step: int = Field(
         ...,
@@ -2451,201 +2414,9 @@ class Person(Creator):
     )
 
 
-class Input(Model):
-    name: str = Field(..., title="Name", description="The name of the input.")
-    description: str = Field(..., title="Description", description="The annotation or description of the input.")
-
-
-class Output(Model):
-    name: str = Field(..., title="Name", description="The name of the output.")
-    type: str = Field(..., title="Type", description="The extension or type of output.")
-
-
-class InputConnection(Model):
-    id: int = Field(..., title="ID", description="The identifier of the input.")
-    output_name: str = Field(
-        ...,
-        title="Output Name",
-        description="The name assigned to the output.",
-    )
-    input_subworkflow_step_id: Optional[int] = Field(
-        None,
-        title="Input Subworkflow Step ID",
-        description="TODO",
-    )
-
-
-class WorkflowStepLayoutPosition(Model):
-    """Position and dimensions of the workflow step represented by a box on the graph."""
-
-    bottom: int = Field(..., title="Bottom", description="Position in pixels of the bottom of the box.")
-    top: int = Field(..., title="Top", description="Position in pixels of the top of the box.")
-    left: int = Field(..., title="Left", description="Left margin or left-most position of the box.")
-    right: int = Field(..., title="Right", description="Right margin or right-most position of the box.")
-    x: int = Field(..., title="X", description="Horizontal pixel coordinate of the top right corner of the box.")
-    y: int = Field(..., title="Y", description="Vertical pixel coordinate of the top right corner of the box.")
-    height: int = Field(..., title="Height", description="Height of the box in pixels.")
-    width: int = Field(..., title="Width", description="Width of the box in pixels.")
-
-
 InvocationsStateCounts = RootModel[Dict[str, int]]
 
 
-class WorkflowStepToExportBase(Model):
-    id: int = Field(
-        ...,
-        title="ID",
-        description="The identifier of the step. It matches the index order of the step inside the workflow.",
-    )
-    type: str = Field(..., title="Type", description="The type of workflow module.")
-    name: str = Field(..., title="Name", description="The descriptive name of the module or step.")
-    annotation: Optional[str] = AnnotationField
-    tool_id: Optional[str] = Field(  # Duplicate of `content_id` or viceversa?
-        None, title="Tool ID", description="The unique name of the tool associated with this step."
-    )
-    uuid: UUID4 = Field(
-        ...,
-        title="UUID",
-        description="Universal unique identifier of the workflow.",
-    )
-    label: Optional[str] = Field(
-        None,
-        title="Label",
-    )
-    inputs: List[Input] = Field(
-        ...,
-        title="Inputs",
-        description="TODO",
-    )
-    outputs: List[Output] = Field(
-        ...,
-        title="Outputs",
-        description="TODO",
-    )
-    input_connections: Dict[str, InputConnection] = Field(
-        {},
-        title="Input Connections",
-        description="TODO",
-    )
-    position: WorkflowStepLayoutPosition = Field(
-        ...,
-        title="Position",
-        description="Layout position of this step in the graph",
-    )
-    workflow_outputs: List[WorkflowOutput] = Field(
-        [], title="Workflow Outputs", description="Workflow outputs associated with this step."
-    )
-
-
-class WorkflowStepToExport(WorkflowStepToExportBase):
-    content_id: Optional[str] = Field(  # Duplicate of `tool_id` or viceversa?
-        None, title="Content ID", description="TODO"
-    )
-    tool_version: Optional[str] = Field(
-        None, title="Tool Version", description="The version of the tool associated with this step."
-    )
-    tool_state: Json = Field(
-        ...,
-        title="Tool State",
-        description="JSON string containing the serialized representation of the persistable state of the step.",
-    )
-    errors: Optional[str] = Field(
-        None,
-        title="Errors",
-        description="An message indicating possible errors in the step.",
-    )
-
-
-class ToolShedRepositorySummary(Model):
-    name: str = Field(
-        ...,
-        title="Name",
-        description="The name of the repository.",
-    )
-    owner: str = Field(
-        ...,
-        title="Owner",
-        description="The owner of the repository.",
-    )
-    changeset_revision: str = Field(
-        ...,
-        title="Changeset Revision",
-        description="TODO",
-    )
-    tool_shed: str = Field(
-        ...,
-        title="Tool Shed",
-        description="The Tool Shed base URL.",
-    )
-
-
-class PostJobAction(Model):
-    action_type: str = Field(
-        ...,
-        title="Action Type",
-        description="The type of action to run.",
-    )
-    output_name: str = Field(
-        ...,
-        title="Output Name",
-        description="The name of the output that will be affected by the action.",
-    )
-    action_arguments: Dict[str, Any] = Field(
-        ...,
-        title="Action Arguments",
-        description="Any additional arguments needed by the action.",
-    )
-
-
-class WorkflowToolStepToExport(WorkflowStepToExportBase):
-    tool_shed_repository: ToolShedRepositorySummary = Field(
-        ..., title="Tool Shed Repository", description="Information about the origin repository of this tool."
-    )
-    post_job_actions: Dict[str, PostJobAction] = Field(
-        ..., title="Post-job Actions", description="Set of actions that will be run when the job finish."
-    )
-
-
-class SubworkflowStepToExport(WorkflowStepToExportBase):
-    subworkflow: "WorkflowToExport" = Field(
-        ..., title="Subworkflow", description="Full information about the subworkflow associated with this step."
-    )
-
-
-class WorkflowToExport(Model):
-    a_galaxy_workflow: str = Field(  # Is this meant to be a bool instead?
-        "true", title="Galaxy Workflow", description="Whether this workflow is a Galaxy Workflow."
-    )
-    format_version: str = Field(
-        "0.1",
-        alias="format-version",  # why this field uses `-` instead of `_`?
-        title="Galaxy Workflow",
-        description="Whether this workflow is a Galaxy Workflow.",
-    )
-    name: str = Field(..., title="Name", description="The name of the workflow.")
-    annotation: Optional[str] = AnnotationField
-    tags: TagCollection
-    uuid: Optional[UUID4] = Field(
-        None,
-        title="UUID",
-        description="Universal unique identifier of the workflow.",
-    )
-    creator: Optional[List[Union[Person, Organization]]] = Field(
-        None,
-        title="Creator",
-        description=("Additional information about the creator (or multiple creators) of this workflow."),
-    )
-    license: Optional[str] = Field(
-        None, title="License", description="SPDX Identifier of the license associated with this workflow."
-    )
-    version: int = Field(
-        ..., title="Version", description="The version of the workflow represented by an incremental number."
-    )
-    steps: Dict[int, Union[SubworkflowStepToExport, WorkflowToolStepToExport, WorkflowStepToExport]] = Field(
-        {}, title="Steps", description="A dictionary with information about all the steps of the workflow."
-    )
-
-
 # Roles -----------------------------------------------------------------
 
 RoleIdField = Annotated[EncodedDatabaseIdField, Field(title="ID", description="Encoded ID of the role")]