Migrate a part of the jobs API to Fast API#16778

Merged

mvdbeek merged 110 commits intogalaxyproject:devfrom heisner-tillman:jobs

Nov 22, 2023

+1,654-997

Commits on Nov 21, 2023

Remove redundant endpoints that have already been migrated

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Move method get_job to JobsService

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Refactor common_problems operation

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Remove mapping to the legacy route of common_problems operation

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Add pydantic model for common_problems operation

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Update client schema

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Create schema file for jobs API and move corresponding model to it

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Move dictify methods to JobsService

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Refactor resume operation

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Add pydantic model for dictify methods

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Remove mapping to the legacy route of resume operation

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Fix typing mistake

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Fix codestyle mistakes

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Update client schema

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Reorder endpoint operations

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Refactor error operation

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Add pydantic models for error operation

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Remove mapping to the legacy route of the error operation

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Update client schema

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Refactor error test

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Refactor search operation

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Add ServiceBase as base class to JobsService

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Remove mapping to legacy route

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Add part of the pydantic models for search operation

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Refactor search tests to specify payload as json

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Regenerate client schema

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Add descriptions to pydantic model

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Add TODO/suggestion to the search operation

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Refactor some JobModels to enable reuse

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Add pydantic models for search operation

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Reformulate TODO

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Regenerate client schema

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Refactor inputs operation

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Remove legacy route

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Add test for inputs operation

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Regenerate the client schema

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Refactor outputs operation

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Remove mapping to legacy route

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Refactor inputs test to include testing for outputs

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Regenrate client schema

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Refactor pydantic model for search operation

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Refactor search operation to return pydantic model

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Regenerate client schema

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Refactor delete operation

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Add pydantic model for delete operation

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Create internal method for Job testing and add test for delete operation

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Regenerate client schema

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Add proper documentation to show operation and use Annotated on delete body

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Refactor destination_params operation

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Add pydantic model for destination_params operation

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Add test for destination_params operation

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Remove mapping to the legacy route

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Regenerate the client schema

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Refactor part of the metrics operation

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Remove mapping to the legacy route

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Add test for part of the metrics operation

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Regenerate the client schema

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Refactor part of the parameters_display operation

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Remove mapping to legacy route

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Add tests for part of parameters_display operation

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Regenerate the client schema

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Refactor second part of the metrics operation

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Remove mapping to the legacy route

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Regenerate client schema

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Refactor get_job method

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Remove TODO from tests

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Refactor second part of parameters_display operation

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Remove mapping to legacy route

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Regenerate client schema

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Remove unused methods

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Remove unused dependencies of JobController

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Add TODO

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Add pydantic model in metrics operations return

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Remove outdated TODOs

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Regenerate the client schema

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Access managers via service, remove uneccessary comments/TODOs and add pydantic model to parameters_display_by_job_id return

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Add pydantic model for parameters_display_by_job_id operation

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Regenerate client schema

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Remove uneccessary comments and add pydantic model to prarameters_display_by_dataset return

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Extend JobDisplayParametersSummary to use it in parameters_display_by_dataset return

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Regenerate the client schema

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Regenerate the client schema

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Apply some suggestions

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Apply some suggestions on pydantic models

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Refined EncodedJobDetails model

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Add description to JobDestinationParams model and remove TODOs

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Regenerate client schema

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Mark *_by_dataset operations as deprecated

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Mark some HdaLddaQueryParam's as deprecated

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Follow up on previous deprecation and refactor create operation

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Remove mapping to some legacy routes

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Regenerate client schema

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Divide JobAssociation into Input and Output model

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Regenerate the client schema

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Use validator to load job search inputs
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Remove accidental code insertion in test_jobs.py

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Set Ids of JobBaseModel to encoded and undo previous model split

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Refine EncodedHdacaSourceId model

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Regenerate client schema

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Fix codestyle issue

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Remove completed TODOs and clarify some path parameters

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Remove outdated TODO

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Add test for delete operation

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Regenerate the client schema

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Add expetion in case of missing parameter

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Refine the JobDestinationParams model

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Regenerate the client schema

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Drop POST /api/jobs
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Update description of '/api/jobs/{job_id}/parameters_display'
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Drop BaseModel docstring
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