lint fixes

lib/galaxy/datatypes/util/maf_utilities.py

@@ -658,8 +658,6 @@ def get_starts_ends_fields_from_gene_bed(line):
     if len(fields) < 12:
         raise Exception(f"Not a proper 12 column BED line ({line}).")
     tx_start = int(fields[1])
-    if (strand := fields[5]) != "-":
-        strand = "+"  # Default strand is +
     cds_start = int(fields[6])
     cds_end = int(fields[7])
 

lib/galaxy/schema/bco/description_domain.py

@@ -6,10 +6,6 @@
 
 from datetime import datetime
 from enum import Enum
-from typing import (
-    List,
-    Optional,
-)
 
 from pydantic import (
     AnyUrl,

lib/galaxy/schema/bco/error_domain.py

@@ -6,7 +6,6 @@
 
 from typing import (
     Any,
-    Dict,
 )
 
 from pydantic import (

lib/galaxy/schema/bco/execution_domain.py

@@ -6,11 +6,6 @@
 
 from datetime import datetime
 from enum import Enum
-from typing import (
-    Dict,
-    List,
-    Optional,
-)
 
 from pydantic import (
     AnyUrl,

lib/galaxy/schema/bco/io_domain.py

@@ -6,10 +6,6 @@
 
 from datetime import datetime
 from enum import Enum
-from typing import (
-    List,
-    Optional,
-)
 
 from pydantic import (
     AnyUrl,

lib/galaxy/schema/bco/parametric_domain.py

@@ -4,8 +4,6 @@
 
 from __future__ import annotations
 
-from typing import List
-
 from pydantic import (
     BaseModel,
     Extra,

lib/galaxy/schema/bco/provenance_domain.py

@@ -6,10 +6,6 @@
 
 from datetime import datetime
 from enum import Enum
-from typing import (
-    List,
-    Optional,
-)
 
 from pydantic import (
     AnyUrl,

lib/galaxy/schema/bco/usability_domain.py

@@ -4,8 +4,6 @@
 
 from __future__ import annotations
 
-from typing import List
-
 from pydantic import (
     BaseModel,
     Field,

lib/galaxy/schema/drs/AccessMethod.py

@@ -5,10 +5,6 @@
 from __future__ import annotations
 
 from enum import Enum
-from typing import (
-    List,
-    Optional,
-)
 
 from pydantic import (
     BaseModel,

lib/galaxy/schema/drs/AccessURL.py

@@ -4,11 +4,6 @@
 
 from __future__ import annotations
 
-from typing import (
-    List,
-    Optional,
-)
-
 from pydantic import (
     BaseModel,
     Field,

lib/galaxy/schema/drs/ContentsObject.py

@@ -4,11 +4,6 @@
 
 from __future__ import annotations
 
-from typing import (
-    List,
-    Optional,
-)
-
 from pydantic import (
     BaseModel,
     Field,

lib/galaxy/schema/drs/DrsObject.py

@@ -6,10 +6,6 @@
 
 from datetime import datetime
 from enum import Enum
-from typing import (
-    List,
-    Optional,
-)
 
 from pydantic import (
     BaseModel,

lib/galaxy/schema/drs/Error.py

@@ -4,7 +4,6 @@
 
 from __future__ import annotations
 
-from typing import Optional
 
 from pydantic import (
     BaseModel,

lib/galaxy/schema/drs/Service.py

@@ -5,7 +5,6 @@
 from __future__ import annotations
 
 from datetime import datetime
-from typing import Optional
 
 from pydantic import (
     AnyUrl,

lib/galaxy/tools/imp_exp/export_history.py

@@ -40,8 +40,6 @@ def main(argv=None):
     )
     parser.add_option("--file-sources", type=str, help="file sources json")
     (options, args) = parser.parse_args(argv)
-    if (galaxy_version := options.galaxy_version) is None:
-        galaxy_version = "19.05"
 
     gzip = bool(options.gzip)
     assert len(args) >= 2

lib/tool_shed_client/schema/trs.py

@@ -5,12 +5,6 @@
 from __future__ import annotations
 
 from enum import Enum
-from typing import (
-    Dict,
-    List,
-    Optional,
-    Union,
-)
 
 from pydantic import (
     BaseModel,

lib/tool_shed_client/schema/trs_service_info.py

@@ -5,7 +5,6 @@
 from __future__ import annotations
 
 from datetime import datetime
-from typing import Optional
 
 from pydantic import (
     AnyUrl,

test/integration/test_kubernetes_runner.py

@@ -19,9 +19,7 @@
 from typing_extensions import Literal
 
 from galaxy.tool_util.verify.wait import timeout_type
-from galaxy.util import (
-    unicodify,
-)
+from galaxy.util import unicodify
 from galaxy_test.base.populators import (
     DatasetPopulator,
     DEFAULT_TIMEOUT,