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Remove conda defaults channel from more places
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nsoranzo committed Sep 2, 2024
1 parent c15417c commit c778a2a
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2 changes: 1 addition & 1 deletion doc/source/admin/dependency_resolvers.rst
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ensure_channels
Conda channels to enable by default. See https://conda.io/docs/user-guide/tasks/manage-channels.html for more
information about channels. This defaults to the value of the global ``conda_ensure_channels`` option or
``iuc,conda-forge,bioconda,defaults`` otherwise. This order should be consistent with the `Bioconda prescribed
``conda-forge,bioconda`` otherwise. This order should be consistent with the `Bioconda prescribed
order <https://github.com/bioconda/bioconda-recipes/blob/master/config.yml>`__ if it includes ``bioconda``.

auto_install
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2 changes: 1 addition & 1 deletion doc/source/admin/galaxy_options.rst
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:Description:
conda channels to enable by default
(https://conda.io/docs/user-guide/tasks/manage-channels.html)
:Default: ``conda-forge,bioconda,defaults``
:Default: ``conda-forge,bioconda``
:Type: str


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2 changes: 1 addition & 1 deletion lib/galaxy/tool_util/deps/resolvers/conda.py
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DEFAULT_CONDARC_OVERRIDE = "_condarc"
# Conda channel order from highest to lowest, following the one used in
# https://github.com/bioconda/bioconda-recipes/blob/master/config.yml
DEFAULT_ENSURE_CHANNELS = "conda-forge,bioconda,defaults"
DEFAULT_ENSURE_CHANNELS = "conda-forge,bioconda"
CONDA_SOURCE_CMD = """[ "$(basename "$CONDA_DEFAULT_ENV")" = "$(basename '{environment_path}')" ] || {{
MAX_TRIES=3
COUNT=0
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