Add data manager bundle workflow integration test

test/integration/test_data_manager_workflow_bundle.py

@@ -0,0 +1,105 @@
+"""Integration tests for workflow syncing."""
+
+from galaxy_test.base.populators import (
+    DatasetPopulator,
+    WorkflowPopulator,
+)
+from galaxy_test.base.uses_shed_api import UsesShedApi
+from .test_containerized_jobs import ContainerizedIntegrationTestCase
+
+
+class TestDataManagerWorkflowInvocation(ContainerizedIntegrationTestCase, UsesShedApi):
+    dataset_populator: DatasetPopulator
+    framework_tool_and_types = True
+    require_admin_user = False
+    admin_user_email = "[email protected]"
+    container_type = "docker"
+
+    @classmethod
+    def handle_galaxy_config_kwds(cls, config):
+        super().handle_galaxy_config_kwds(config)
+        config["check_migrate_databases"] = False
+        config["admin_users"] = cls.admin_user_email
+
+    def setUp(self):
+        super().setUp()
+        self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
+        self.workflow_populator = WorkflowPopulator(self.galaxy_interactor)
+
+    def test_run_data_manager_workflow(self):
+        self.install_repository("devteam", "data_manager_fetch_genome_dbkeys_all_fasta", "4d3eff1bc421")
+        self.install_repository("devteam", "data_manager_bwa_mem_index_builder", "9e993022c762")
+        with self._different_user(email=self.admin_user_email), self.dataset_populator.test_history() as history_id:
+            self.workflow_populator.run_workflow(
+                """
+class: GalaxyWorkflow
+label: Indexing workflow
+inputs:
+  dbkey:
+    optional: false
+    type: string
+  display name:
+    optional: false
+    type: string
+  name:
+    optional: false
+    type: string
+  id:
+    optional: false
+    type: string
+  url:
+    optional: false
+    type: string
+steps:
+  fasta_index:
+    tool_id: toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_dbkeys_all_fasta/data_manager_fetch_genome_all_fasta_dbkey/0.0.4
+    tool_version: 0.0.4
+    tool_state:
+      dbkey_source:
+        dbkey_source_selector: new
+      reference_source:
+        reference_source_selector: url
+      sorting:
+        sort_selector: as_is
+      __data_manager_mode: bundle
+    in:
+      dbkey_source|dbkey:
+        source: dbkey
+      dbkey_source|dbkey_name:
+        source: display name
+      reference_source|user_url:
+        source: url
+      sequence_id:
+        source: id
+      sequence_name:
+        source: name
+
+  bwa_mem_index:
+    tool_id: toolshed.g2.bx.psu.edu/repos/devteam/data_manager_bwa_mem_index_builder/bwa_mem_index_builder_data_manager/0.0.5
+    tool_version: 0.0.5
+    tool_state:
+      __data_manager_mode: bundle
+    in:
+      all_fasta_source: fasta_index/out_file
+
+test_data:
+    dbkey:
+        value: wf_bundle
+        type: raw
+    display name:
+        value: display name value
+        type: raw
+    id:
+        value: wf_bundle_id
+        type: raw
+    name:
+        value: workflow bundle
+        type: raw
+    url:
+        value: https://raw.githubusercontent.com/galaxyproject/galaxy/dev/test-data/1.fasta
+        type: raw
+""",
+                history_id=history_id,
+                wait=True,
+                assert_ok=True,
+            )