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Merge pull request #17247 from galaxybot/dev_auto_update_dependencies
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Update Python dependencies
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@mvdbeek
mvdbeek authored Jan 6, 2024
2 parents b54abb7 + 9f45569 commit 7f6cd25
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Showing 4 changed files with 24 additions and 24 deletions.
16 changes: 8 additions & 8 deletions lib/galaxy/dependencies/dev-requirements.txt
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Expand Up @@ -5,7 +5,7 @@ amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.12"
anyio==4.2.0 ; python_version >= "3.8" and python_version < "3.12"
ase==3.22.1 ; python_version >= "3.8" and python_version < "3.12"
async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11"
attrs==23.1.0 ; python_version >= "3.8" and python_version < "3.12"
attrs==23.2.0 ; python_version >= "3.8" and python_version < "3.12"
axe-selenium-python==2.1.6 ; python_version >= "3.8" and python_version < "3.12"
babel==2.14.0 ; python_version >= "3.8" and python_version < "3.12"
backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
Expand All @@ -27,7 +27,7 @@ colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.12" and (sys_p
contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.12"
coverage[toml]==7.4.0 ; python_version >= "3.8" and python_version < "3.12"
cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12"
cwltest==2.4.20231031143732 ; python_version >= "3.8" and python_version < "3.12"
cwltest==2.4.20231222081524 ; python_version >= "3.8" and python_version < "3.12"
cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.12"
darker==1.7.2 ; python_version >= "3.8" and python_version < "3.12"
defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.12"
Expand Down Expand Up @@ -74,11 +74,11 @@ mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.12"
myst-parser==2.0.0 ; python_version >= "3.8" and python_version < "3.12"
nh3==0.2.15 ; python_version >= "3.8" and python_version < "3.12"
numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9"
numpy==1.26.2 ; python_version >= "3.9" and python_version < "3.12"
numpy==1.26.3 ; python_version >= "3.9" and python_version < "3.12"
outcome==1.3.0.post0 ; python_version >= "3.8" and python_version < "3.12"
packaging==23.2 ; python_version >= "3.8" and python_version < "3.12"
pathspec==0.12.1 ; python_version >= "3.8" and python_version < "3.12"
pillow==10.1.0 ; python_version >= "3.8" and python_version < "3.12"
pillow==10.2.0 ; python_version >= "3.8" and python_version < "3.12"
pkce==1.0.3 ; python_version >= "3.8" and python_version < "3.12"
pkginfo==1.9.6 ; python_version >= "3.8" and python_version < "3.12"
platformdirs==4.1.0 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -98,7 +98,7 @@ pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.12"
pyparsing==3.1.1 ; python_version >= "3.8" and python_version < "3.12"
pyproject-hooks==1.0.0 ; python_version >= "3.8" and python_version < "3.12"
pysocks==1.7.1 ; python_version >= "3.8" and python_version < "3.12"
pytest-asyncio==0.23.2 ; python_version >= "3.8" and python_version < "3.12"
pytest-asyncio==0.23.3 ; python_version >= "3.8" and python_version < "3.12"
pytest-base-url==2.0.0 ; python_version >= "3.8" and python_version < "3.12"
pytest-celery==0.0.0 ; python_version >= "3.8" and python_version < "3.12"
pytest-cov==4.1.0 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -110,7 +110,7 @@ pytest-mock==3.12.0 ; python_version >= "3.8" and python_version < "3.12"
pytest-playwright==0.4.3 ; python_version >= "3.8" and python_version < "3.12"
pytest-postgresql==5.0.0 ; python_version >= "3.8" and python_version < "3.12"
pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.12"
pytest==7.4.3 ; python_version >= "3.8" and python_version < "3.12"
pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.12"
python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.12"
python-irodsclient==1.1.9 ; python_version >= "3.8" and python_version < "3.12"
python-slugify==8.0.1 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -126,7 +126,7 @@ rfc3986==2.0.0 ; python_version >= "3.8" and python_version < "3.12"
rich==13.7.0 ; python_version >= "3.8" and python_version < "3.12"
ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.12" and python_version >= "3.8"
ruamel-yaml==0.18.5 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.5.20231201181309 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.5.20240102191335 ; python_version >= "3.8" and python_version < "3.12"
scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.9"
scipy==1.11.4 ; python_version >= "3.9" and python_version < "3.12"
secretstorage==3.3.3 ; python_version >= "3.8" and python_version < "3.12" and sys_platform == "linux"
Expand Down Expand Up @@ -163,7 +163,7 @@ urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.12"
urllib3[socks]==1.26.18 ; python_version >= "3.8" and python_version < "3.12"
vine==5.1.0 ; python_version >= "3.8" and python_version < "3.12"
watchdog==3.0.0 ; python_version >= "3.8" and python_version < "3.12"
wcwidth==0.2.12 ; python_version >= "3.8" and python_version < "3.12"
wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.12"
werkzeug==3.0.1 ; python_version >= "3.8" and python_version < "3.12"
wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.12"
wsproto==1.2.0 ; python_version >= "3.8" and python_version < "3.12"
Expand Down
8 changes: 4 additions & 4 deletions lib/galaxy/dependencies/pinned-lint-requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
attrs==23.1.0
flake8==6.1.0
attrs==23.2.0
flake8==7.0.0
flake8-bugbear==23.12.2
mccabe==0.7.0
pycodestyle==2.11.1
pyflakes==3.1.0
ruff==0.1.9
pyflakes==3.2.0
ruff==0.1.11
14 changes: 7 additions & 7 deletions lib/galaxy/dependencies/pinned-requirements.txt
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Expand Up @@ -16,7 +16,7 @@ arcp==0.2.1 ; python_version >= "3.8" and python_version < "3.12"
argcomplete==3.2.1 ; python_version >= "3.8" and python_version < "3.12"
async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11"
attmap==0.13.2 ; python_version >= "3.8" and python_version < "3.12"
attrs==23.1.0 ; python_version >= "3.8" and python_version < "3.12"
attrs==23.2.0 ; python_version >= "3.8" and python_version < "3.12"
babel==2.14.0 ; python_version >= "3.8" and python_version < "3.12"
backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
Expand Down Expand Up @@ -112,7 +112,7 @@ mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.12"
networkx==2.5 ; python_version >= "3.8" and python_version < "3.12"
nodeenv==1.8.0 ; python_version >= "3.8" and python_version < "3.12"
numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9"
numpy==1.26.2 ; python_version >= "3.9" and python_version < "3.12"
numpy==1.26.3 ; python_version >= "3.9" and python_version < "3.12"
oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.12"
orjson==3.9.10 ; python_version >= "3.8" and python_version < "3.12"
oyaml==1.0 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -134,7 +134,7 @@ pycryptodome==3.19.1 ; python_version >= "3.8" and python_version < "3.12"
pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.12"
pydantic==1.10.13 ; python_version >= "3.8" and python_version < "3.12"
pydantic[email]==1.10.13 ; python_version >= "3.8" and python_version < "3.12"
pydot==1.4.2 ; python_version >= "3.8" and python_version < "3.12"
pydot==2.0.0 ; python_version >= "3.8" and python_version < "3.12"
pyeventsystem==0.1.0 ; python_version >= "3.8" and python_version < "3.12"
pyfaidx==0.7.2.2 ; python_version >= "3.8" and python_version < "3.12"
pygments==2.17.2 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -155,7 +155,7 @@ pytz==2023.3.post1 ; python_version >= "3.8" and python_version < "3.12"
pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.12"
pyzmq==25.1.2 ; python_version >= "3.8" and python_version < "3.12"
rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.12"
referencing==0.32.0 ; python_version >= "3.8" and python_version < "3.12"
referencing==0.32.1 ; python_version >= "3.8" and python_version < "3.12"
refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.12"
regex==2023.12.25 ; python_version >= "3.8" and python_version < "3.12"
repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -171,7 +171,7 @@ rsa==4.9 ; python_version >= "3.8" and python_version < "3.12"
ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.12" and python_version >= "3.8"
ruamel-yaml==0.18.5 ; python_version >= "3.8" and python_version < "3.12"
s3fs==2023.12.2 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.5.20231201181309 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.5.20240102191335 ; python_version >= "3.8" and python_version < "3.12"
setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.12"
setuptools==69.0.3 ; python_version >= "3.8" and python_version < "3.12"
shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -180,7 +180,7 @@ sniffio==1.3.0 ; python_version >= "3.8" and python_version < "3.12"
social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.8" and python_version < "3.12"
sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.12"
spython==0.3.13 ; python_version >= "3.8" and python_version < "3.12"
sqlalchemy==1.4.50 ; python_version >= "3.8" and python_version < "3.12"
sqlalchemy==1.4.51 ; python_version >= "3.8" and python_version < "3.12"
sqlitedict==2.1.0 ; python_version >= "3.8" and python_version < "3.12"
sqlparse==0.4.4 ; python_version >= "3.8" and python_version < "3.12"
starlette-context==0.3.6 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -204,7 +204,7 @@ urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.12"
uvicorn==0.25.0 ; python_version >= "3.8" and python_version < "3.12"
uvloop==0.19.0 ; python_version >= "3.8" and python_version < "3.12"
vine==5.1.0 ; python_version >= "3.8" and python_version < "3.12"
wcwidth==0.2.12 ; python_version >= "3.8" and python_version < "3.12"
wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.12"
webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.12"
webob==1.8.7 ; python_version >= "3.8" and python_version < "3.12"
whoosh==2.7.4 ; python_version >= "3.8" and python_version < "3.12"
Expand Down
10 changes: 5 additions & 5 deletions lib/galaxy/dependencies/pinned-typecheck-requirements.txt
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Expand Up @@ -9,13 +9,13 @@ types-bleach==6.1.0.1 ; python_version >= "3.8" and python_version < "3.12"
types-boto==2.49.18.9 ; python_version >= "3.8" and python_version < "3.12"
types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.12"
types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.12"
types-docutils==0.20.0.3 ; python_version >= "3.8" and python_version < "3.12"
types-markdown==3.5.0.3 ; python_version >= "3.8" and python_version < "3.12"
types-paramiko==3.3.0.2 ; python_version >= "3.8" and python_version < "3.12"
types-docutils==0.20.0.20240106 ; python_version >= "3.8" and python_version < "3.12"
types-markdown==3.5.0.20240106 ; python_version >= "3.8" and python_version < "3.12"
types-paramiko==3.4.0.20240106 ; python_version >= "3.8" and python_version < "3.12"
types-pkg-resources==0.1.3 ; python_version >= "3.8" and python_version < "3.12"
types-python-dateutil==2.8.19.14 ; python_version >= "3.8" and python_version < "3.12"
types-python-dateutil==2.8.19.20240106 ; python_version >= "3.8" and python_version < "3.12"
types-pyyaml==6.0.12.12 ; python_version >= "3.8" and python_version < "3.12"
types-requests==2.31.0.6 ; python_version >= "3.8" and python_version < "3.12"
types-six==1.16.21.9 ; python_version >= "3.8" and python_version < "3.12"
types-six==1.16.21.20240106 ; python_version >= "3.8" and python_version < "3.12"
types-urllib3==1.26.25.14 ; python_version >= "3.8" and python_version < "3.12"
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.12"

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