Skip to content

Commit

Permalink
Merge pull request #18376 from mvdbeek/drop_unnecessary_workflow_name…
Browse files Browse the repository at this point in the history
…_and_annotation_escaping

[24.0] Drop unnecessary escaping for workflow name and annotation
  • Loading branch information
mvdbeek authored Jun 12, 2024
2 parents 794c8ab + 0a2d50a commit 62b60bd
Showing 1 changed file with 4 additions and 6 deletions.
10 changes: 4 additions & 6 deletions lib/galaxy/webapps/galaxy/api/workflows.py
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,6 @@
status,
)
from gxformat2._yaml import ordered_dump
from markupsafe import escape
from pydantic import (
UUID1,
UUID4,
Expand Down Expand Up @@ -87,7 +86,6 @@
from galaxy.tools import recommendations
from galaxy.tools.parameters import populate_state
from galaxy.tools.parameters.workflow_utils import workflow_building_modes
from galaxy.util.sanitize_html import sanitize_html
from galaxy.version import VERSION
from galaxy.web import (
expose_api,
Expand Down Expand Up @@ -270,7 +268,7 @@ def create(self, trans: GalaxyWebTransaction, payload=None, **kwd):
)
import_source = "URL"
except Exception:
raise exceptions.MessageException(f"Failed to open URL '{escape(archive_source)}'.")
raise exceptions.MessageException(f"Failed to open URL '{archive_source}'.")
elif hasattr(archive_file, "file"):
uploaded_file = archive_file.file
uploaded_file_name = uploaded_file.name
Expand Down Expand Up @@ -450,7 +448,7 @@ def update(self, trans: GalaxyWebTransaction, id, payload, **kwds):
name_updated = new_workflow_name and new_workflow_name != stored_workflow.name
steps_updated = "steps" in workflow_dict
if name_updated and not steps_updated:
sanitized_name = sanitize_html(new_workflow_name or old_workflow.name)
sanitized_name = new_workflow_name or old_workflow.name
if not sanitized_name:
raise exceptions.MessageException("Workflow must have a valid name.")
workflow = old_workflow.copy(user=trans.user)
Expand All @@ -474,7 +472,7 @@ def update(self, trans: GalaxyWebTransaction, id, payload, **kwds):
require_flush = True

if "annotation" in workflow_dict and not steps_updated:
newAnnotation = sanitize_html(workflow_dict["annotation"])
newAnnotation = workflow_dict["annotation"]
self.add_item_annotation(trans.sa_session, trans.user, stored_workflow, newAnnotation)
require_flush = True

Expand Down Expand Up @@ -601,7 +599,7 @@ def __api_import_from_archive(self, trans: GalaxyWebTransaction, archive_data, s
workflow = workflow.latest_workflow

response = {
"message": f"Workflow '{escape(workflow.name)}' imported successfully.",
"message": f"Workflow '{workflow.name}' imported successfully.",
"status": "success",
"id": trans.security.encode_id(workflow_id),
}
Expand Down

0 comments on commit 62b60bd

Please sign in to comment.