add a test tool deleting output

which should fail (#14206)
galaxyproject · Jun 30, 2022 · 5c0450e · 5c0450e
1 parent 52de57b
commit 5c0450e
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Showing 2 changed files with 30 additions and 1 deletion.
diff --git a/test/functional/tools/tool_deleting_output.xml b/test/functional/tools/tool_deleting_output.xml
@@ -0,0 +1,29 @@
+<tool id="tool_deleting_output" name="tool_deleting_output" version="0.1.0" license="AFL-3.0" profile="21.09">
+    <command><![CDATA[
+rm '$out_file1' &&
+exit $exit_code
+    ]]></command>
+    <inputs>
+        <param name="exit_code" type="integer" value="0"/>
+    </inputs>
+    <outputs>
+        <data name="out_file1" format="txt" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="exit_code" value="0"/>
+            <output name="out_file1">
+                <assert_contents>
+                    <has_size value="0"/>
+                </assert_contents>
+            </output>
+        </test>
+        <test expect_exit_code="1" expect_failure="true">
+            <param name="exit_code" value="1"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        This tool tests what happens if the underlying program removes the output data set.
+        With outputs_to_working_directory this provoked https://github.com/galaxyproject/galaxy/issues/14206
+    ]]></help>
+</tool>
diff --git a/test/integration/test_job_outputs_to_working_directory.py b/test/integration/test_job_outputs_to_working_directory.py
@@ -15,4 +15,4 @@ def handle_galaxy_config_kwds(cls, config):
 
 instance = integration_util.integration_module_instance(JobOutputsToWorkingDirectoryIntegrationInstance)
 
-test_tools = integration_util.integration_tool_runner(["output_format", "output_empty_work_dir", "collection_creates_pair_from_work_dir"])
+test_tools = integration_util.integration_tool_runner(["output_format", "output_empty_work_dir", "collection_creates_pair_from_work_dir", "tool_deleting_output"])
Original file line number	Diff line number	Diff line change
Expand Up		@@ -15,4 +15,4 @@ def handle_galaxy_config_kwds(cls, config):

		instance = integration_util.integration_module_instance(JobOutputsToWorkingDirectoryIntegrationInstance)

		test_tools = integration_util.integration_tool_runner(["output_format", "output_empty_work_dir", "collection_creates_pair_from_work_dir"])
		test_tools = integration_util.integration_tool_runner(["output_format", "output_empty_work_dir", "collection_creates_pair_from_work_dir", "tool_deleting_output"])