Fix directory unpacking

galaxyproject · Apr 2, 2024 · 58a1c4c · 58a1c4c
1 parent e19753c
commit 58a1c4c
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/lib/galaxy/tools/data_fetch.py b/lib/galaxy/tools/data_fetch.py
@@ -359,8 +359,8 @@ def walk_extra_files(items, prefix=""):
                 assert path
                 datatype.groom_dataset_content(path)
 
-            if datatype.file_ext == "directory":
-                CompressedFile.extract(path, extra_files_path)
+            if ext == "directory" and not deferred and path:
+                CompressedFile(path).extract(extra_files_path)
                 staged_extra_files = extra_files_path
 
             if len(transform) > 0: