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SQLAlchemy 2.0 upgrades to ORM usage in /lib #26030

SQLAlchemy 2.0 upgrades to ORM usage in /lib

SQLAlchemy 2.0 upgrades to ORM usage in /lib #26030

Workflow file for this run

name: Toolshed tests
on:
push:
paths-ignore:
- 'doc/**'
- 'lib/galaxy_test/selenium/**'
pull_request:
paths-ignore:
- 'doc/**'
- 'lib/galaxy_test/selenium/**'
env:
GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8'
TOOL_SHED_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/toolshed?client_encoding=utf8'
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test:
name: Test
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7']
services:
postgres:
image: postgres:13
env:
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
- 5432:5432
steps:
- uses: actions/checkout@v3
with:
path: 'galaxy root'
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Get full Python version
id: full-python-version
shell: bash
run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
- name: Cache pip dir
uses: actions/cache@v3
id: pip-cache
with:
path: ~/.cache/pip
key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
- name: Cache galaxy venv
uses: actions/cache@v3
with:
path: 'galaxy root/.venv'
key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-toolshed
- name: Run tests
run: './run_tests.sh -toolshed'
working-directory: 'galaxy root'
- uses: actions/upload-artifact@v3
if: failure()
with:
name: Toolshed test results (${{ matrix.python-version }})
path: 'galaxy root/run_toolshed_tests.html'