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Update sanitize_allowlist #504

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Nov 18, 2024
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Update sanitize_allowlist #504

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12 changes: 11 additions & 1 deletion galaxy/values.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -600,31 +600,41 @@ configs:
</workflow_schedulers>
sanitize_allowlist.txt: |
toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.7+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.7.0+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.3.1+galaxy0
toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1
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Random thought -- we made these support a base path match, so you could probably consolidate safe, trusted tools like:

toolshed.g2.bx.psu.edu/repos/devteam/fastqc/

(or shorter, but per-tool seems like good granularity)

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Nice, thanks for pointing that out. I'll do that in a bit.

toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.48+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.44+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq/1.28.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.11+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.9.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.6
toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.5.6+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.0.5.0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.5.0
toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/prestor_abseq3/0.6.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.3.0.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/5.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3r.1
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1
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