Merge pull request #314 from galaxyproject/data_pvc

Changes for not mounting entire NFS to each job
galaxyproject · Apr 16, 2024 · 456fc6d · 456fc6d
2 parents 0afe341 + cb7e7d3
commit 456fc6d
Showing 1 changed file with 10 additions and 3 deletions.
diff --git a/galaxy/values.yaml b/galaxy/values.yaml
@@ -383,13 +383,20 @@ configs:
       k8s:
         load: galaxy.jobs.runners.kubernetes:KubernetesJobRunner
         k8s_use_service_account: true
-        k8s_persistent_volume_claims: |-
+        k8s_data_volume_claim: |-
+          {{ template "galaxy.pvcname" . -}}:{{ .Values.persistence.mountPath -}}:r
+        k8s_working_volume_claim: |-
           {{ template "galaxy.pvcname" . -}}:{{ .Values.persistence.mountPath -}}
+        k8s_persistent_volume_claims: |-
+          {{ template "galaxy.pvcname" . -}}/config:{{ .Values.persistence.mountPath -}}/config:r,
+          {{- template "galaxy.pvcname" . -}}/tmp:{{ .Values.persistence.mountPath -}}/tmp:rw,
+          {{- template "galaxy.pvcname" . -}}/tool-data:{{ .Values.persistence.mountPath -}}/tool-data:r,
+          {{- template "galaxy.pvcname" . -}}/tools:{{ .Values.persistence.mountPath -}}/tools:r
           {{- if .Values.refdata.enabled -}}
-          ,{{- template "galaxy.fullname" $ -}}-refdata-gxy-pvc/data.galaxyproject.org:/cvmfs/data.galaxyproject.org
+          ,{{- template "galaxy.fullname" $ -}}-refdata-gxy-pvc/data.galaxyproject.org:/cvmfs/data.galaxyproject.org:r
           {{- end -}}
           {{- if .Values.setupJob.downloadToolConfs.enabled -}}
-          ,{{ template "galaxy.pvcname" . -}}/{{ .Values.setupJob.downloadToolConfs.volume.subPath }}:{{ .Values.setupJob.downloadToolConfs.volume.mountPath -}}
+          ,{{ template "galaxy.pvcname" . -}}/{{ .Values.setupJob.downloadToolConfs.volume.subPath }}:{{ .Values.setupJob.downloadToolConfs.volume.mountPath -}}:r
           {{- end -}}
           {{- if .Values.extraVolumes -}}
           {{- template "galaxy.extra_pvc_mounts" . -}}