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Switch to cloudnativepg #3

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5eed20c
Switch to cloudnative-pg
nuwang Nov 26, 2024
53449fe
Update appversion to match galaxy
nuwang Nov 26, 2024
8e559c7
Remove alias due to https://github.com/cloudnative-pg/charts/issues/351
nuwang Nov 26, 2024
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -19,7 +19,7 @@ and `Helm` ([instructions](https://helm.sh/docs/intro/install/)) installed.
## Dependency charts

This chart relies on the features of other charts for common functionality:
- [postgres-operator](https://github.com/zalando/postgres-operator) for the
- [postgres-operator](https://cloudnative-pg.io/documentation/current/) for the
database;
- [galaxy-cvmfs-csi](https://github.com/CloudVE/galaxy-cvmfs-csi-helm) for linking the
reference data to Galaxy and jobs based on CVMFS (default).
Expand Down Expand Up @@ -83,7 +83,7 @@ current default values can be found in `values.yaml` file.
| `cvmfs.deploy` | Whether to deploy the CVMFS sub chart. Default is true. |
| `cvmfs.{}` | Refer to the [galaxy cvmfs chart](https://github.com/CloudVE/galaxy-cvmfs-csi-helm) for possible configuration values. |
| `postgresql.deploy` | Whether to deploy the postgres sub chart. Default is true. |
| `postgresql.{}` | Refer to the [postgres-operator chart](https://github.com/zalando/postgres-operator) for possible configuration values. |
| `postgresql.{}` | Refer to the [postgres-operator chart](https://cloudnative-pg.io/documentation/current/) for possible configuration values. |
| `rabbitmq.deploy` | Whether to deploy the rabbitmq sub chart. Default is true. |
| `rabbitmq.{}` | Refer to the [rabbitmq-cluster-operator chart](https://github.com/rabbitmq/cluster-operator) for possible configuration values. |
| `s3csi.deploy` | Whether to deploy the csi-s3 sub chart as an alternative to cvmfs. Default is false. |
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11 changes: 6 additions & 5 deletions galaxy-deps/Chart.yaml
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Expand Up @@ -2,15 +2,16 @@ apiVersion: v2
name: galaxy-deps
type: application
version: 1.0.0
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I think it would be great if we can retain v1.0.0 for this fix. There's also the existing packaging issue that needs to be resolved: https://github.com/galaxyproject/galaxy-helm-deps/releases

appVersion: "23.1"
appVersion: "24.1.3"
description: Chart containing environmental dependencies needed by Galaxy. Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.
icon: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo_square.png
dependencies:
- name: postgres-operator
repository: https://raw.githubusercontent.com/zalando/postgres-operator/master/charts/postgres-operator/
version: 1.9.0
- name: cloudnative-pg
repository: https://cloudnative-pg.github.io/charts/
version: 0.22.1
condition: postgresql.deploy
alias: postgresql
# cannot alias due to: https://github.com/cloudnative-pg/charts/issues/351
# alias: postgresql
tags:
- deploy-postgres
- name: csi-s3
Expand Down