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Enh: sparse model, ppi port, Enh: arbitrary L1, Bug fix: fix group contrast, Enh: add conjunction analysis stub #16

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Enh: sparse model, ppi port, Enh: arbitrary L1, Bug fix: fix group contrast, Enh: add conjunction analysis stub #16

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df3e651
return runs using task name not a number eg use task-emosent not task=5
Sep 28, 2016
de8e002
process arbitrary runs per subject
Sep 29, 2016
b893fa2
added comments to group script
Sep 29, 2016
23b6879
datasink renaming of qa motion to remove the duplicate model task sub…
Oct 2, 2016
95c5c56
tsnr std output and mean output
Oct 4, 2016
24e6707
conjunction analysis stub
Oct 7, 2016
a7eb16a
fix: group contrast vector truncation
Oct 19, 2016
85571dc
Merge remote-tracking branch 'upstream/master'
Oct 19, 2016
17b9dbc
Fix: Remove model/task duplicate in data synch for roi
Oct 19, 2016
d7bf4d9
Enh: Sink registration.dat to qa/bbregister
Oct 19, 2016
9d1d189
Fix: default to all run processing if runs not specified
Oct 24, 2016
03a4b10
Enh: remove extraneous input argument to multiregress internal func
Oct 24, 2016
230ce79
Enh: port K. Sitek ppi code. Untested.
Oct 29, 2016
2055e24
Enh: add SpecifySparseModel option
Oct 29, 2016
52cc5d7
WIP: merge sparse model from master to ppi branch
Oct 29, 2016
b7b359f
Enh: add sparse model check if using ppi
Oct 29, 2016
0846aba
Fix: correct sparse model and ppi flag arg parsing
Oct 30, 2016
d9ee8a7
Fix: add ppi directory and roi flags. Fix timeseries writeout which …
Nov 2, 2016
26700bb
Enh: sink realigned, smoothed, highpassed and just realigned files fo…
Nov 15, 2016
3384d41
Fix: set modelfit inputspec.bases to None for sparse model.
Nov 15, 2016
f0f2d63
Fix: update print statement as python 3.x format for nipype.
Dec 12, 2016
0e58688
Enh: add datsink sub for realigned folder.
Jan 15, 2017
164b0ef
Fix: correct sparse model None option syntax.
Feb 16, 2017
8188658
Fix: cast float as int for reshape.
Feb 16, 2017
4494665
Fix: handle int cast and sparse model none syntax.
Feb 16, 2017
a182af9
Merge branch 'master' of github.com:gciccarelli3/openfmri
Feb 16, 2017
8bea62e
Enh: create L1 proc graph.
Feb 18, 2017
4946b8a
WIP: update palm.
Mar 1, 2017
9344694
WIP: try smooth by surface, not working.
Mar 1, 2017
e63ad8a
Enh: remove nouncorrected option in palm.
Mar 20, 2017
c7c203d
Enh: revert by hand back to a pre smooth workflow that should work an…
Mar 20, 2017
6f51f52
Enh: run locally on a node.
Mar 20, 2017
11c43dd
Enh: increase palm slurm timelimit.
Mar 29, 2017
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