Add postgres server to github action

funkelab · Nov 17, 2023 · 5b9fcda · 5b9fcda
1 parent 50ff8ca
commit 5b9fcda
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Showing 2 changed files with 15 additions and 7 deletions.
diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
@@ -6,11 +6,24 @@ on:
 jobs:
   test:
     runs-on: ubuntu-latest
+
+    services:
+      postgres:
+        image: postgres
+        env:
+          POSTGRES_HOST_AUTH_METHOD: trust
+        ports:
+          - 5432:5432
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+
     strategy:
       fail-fast: false
       matrix:
         python-version: ["3.9", "3.10"]
-        mongodb-version: ["5.0", "6.0"]
 
     steps:
       - uses: actions/checkout@v2
@@ -20,11 +33,6 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Start MongoDB
-        uses: supercharge/[email protected]
-        with:
-          mongodb-version: ${{ matrix.mongodb-version }}
-
       - name: Install dependencies
         run: pip install ".[dev]"
 

diff --git a/funlib/persistence/graphs/pgsql_graph_database.py b/funlib/persistence/graphs/pgsql_graph_database.py
@@ -15,7 +15,7 @@ def __init__(
         position_attributes: list[str],
         db_name: str,
         db_host: str = "localhost",
-        db_user: Optional[str] = None,
+        db_user: str = "postgres",
         db_password: Optional[str] = None,
         db_port: Optional[int] = None,
         mode: str = "r+",