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@ftdc-picsl

Penn FTDC-PICSL group

Collaborative projects from the FTD Center and PICSL lab http://ftd.med.upenn.edu/our-center

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  1. antsct-aging antsct-aging Public

    ANTs cortical thickness pipeline container, contains a template for older individuals

    Perl 1 2

  2. pmacsPreps pmacsPreps Public

    *prep wrapper scripts for the PMACS cluster

    Shell 1

  3. QuANTs QuANTs Public

    Quality control, quantifying regional values, and querying of ANTs output

    Python

  4. SynthSeg SynthSeg Public

    Containerized implementation of SynthSeg with additional preprocessing options

    Python 2

  5. antsnetct antsnetct Public

    Cortical thickness with ANTsPyNet

    Python

  6. T1wPreprocessing T1wPreprocessing Public

    Container for pre-processing T1w data before running structural analyses

    Python

Repositories

Showing 10 of 32 repositories
  • bstat Public

    A simple wrapper for more informative bjobs output

    ftdc-picsl/bstat’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Dec 19, 2024
  • antsnetct Public

    Cortical thickness with ANTsPyNet

    ftdc-picsl/antsnetct’s past year of commit activity
    Python 0 Apache-2.0 0 3 0 Updated Nov 26, 2024
  • penn-pet Public

    Development of a basic brain PET processing pipeline for the UPenn community

    ftdc-picsl/penn-pet’s past year of commit activity
    Shell 0 BSD-3-Clause 3 0 0 Updated Nov 8, 2024
  • pmacsPreps Public

    *prep wrapper scripts for the PMACS cluster

    ftdc-picsl/pmacsPreps’s past year of commit activity
    Shell 0 MIT 1 0 0 Updated Nov 7, 2024
  • pmacsT1wPreprocessing Public

    Wrapper to run T1wPreprocessing container on the LPC

    ftdc-picsl/pmacsT1wPreprocessing’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 17, 2024
  • pmacsAntsnetct Public

    Wrapper for submitting antsnetct jobs on the PMACS cluster

    ftdc-picsl/pmacsAntsnetct’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 7, 2024
  • QuANTs Public

    Quality control, quantifying regional values, and querying of ANTs output

    ftdc-picsl/QuANTs’s past year of commit activity
    Python 0 0 5 0 Updated Oct 6, 2024
  • LongitudinalThickness Public

    Development of longitudinal cortical thickness pipelines

    ftdc-picsl/LongitudinalThickness’s past year of commit activity
    0 0 0 0 Updated Oct 4, 2024
  • pmacsSynthSeg Public

    Wrapper to run synthseg on the PMACS LPC

    ftdc-picsl/pmacsSynthSeg’s past year of commit activity
    Python 1 0 0 0 Updated Sep 9, 2024
  • T1wPreprocessing Public

    Container for pre-processing T1w data before running structural analyses

    ftdc-picsl/T1wPreprocessing’s past year of commit activity
    Python 0 0 0 0 Updated Sep 6, 2024
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