Merge remote-tracking branch 'upstream/master' into find_error #33
Workflow file for this run
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| name: main | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| inputs: | |
| ramp_workflow_url: | |
| description: 'pip installable ramp-workflow repo URL' | |
| required: true | |
| default: 'https://github.com/paris-saclay-cds/ramp-workflow/archive/refs/heads/master.zip' | |
| jobs: | |
| main: | |
| name: test-py-${{ matrix.python }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04] | |
| python: ["3.8", "3.9", "3.10"] | |
| include: | |
| - os: ubuntu-20.04 | |
| python: 3.9 | |
| # the following has no effect with manual trigger | |
| # where the ramp-workflow is specified anyway | |
| ramp_workflow_version: master | |
| # Do not ignore bash profile files. From: | |
| # https://github.com/marketplace/actions/setup-miniconda | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| services: | |
| postgres: | |
| image: postgres:11.6-alpine | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: "" | |
| # Add a health check | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| #mamba-version: "*" | |
| channels: conda-forge | |
| activate-environment: testenv | |
| environment-file: environment.yml | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python }} | |
| - name: Create iris_kit env | |
| run: | | |
| mamba env create -f ci_tools/environment_iris_kit.yml | |
| - name: Install ramp-board | |
| run: | | |
| conda activate testenv | |
| if [ "$PYTHON_VERSION" == "3.8" ]; then | |
| python -m pip install "dask==2021.4.1" "distributed==2021.4.1" | |
| fi | |
| if [ "${{ matrix.ramp_workflow_version }}" == "master" ]; then | |
| pip install https://github.com/paris-saclay-cds/ramp-workflow/archive/refs/heads/master.zip | |
| fi | |
| if [ "${{ github.event.inputs.ramp_workflow_url }}" != "" ]; then | |
| pip install "${{ github.event.inputs.ramp_workflow_url }}" | |
| fi | |
| make inplace | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python }} | |
| - name: Test ramp-frontend | |
| run: | | |
| set -e | |
| conda activate testenv | |
| python -m smtpd -n -c DebuggingServer 127.0.0.1:8025 & | |
| sleep 3 # wait for the server to start | |
| pytest -rvsl ramp-frontend --cov=ramp_frontend --cov-report=term-missing --cov-report=xml --cov-append | |
| - name: Test ramp-engine | |
| run: | | |
| set -e | |
| conda activate testenv | |
| pytest -rvsl ramp-engine/ --cov=ramp_engine --cov-report=term-missing --cov-report=xml --cov-append | |
| - name: Test ramp-database | |
| run: | | |
| set -e | |
| conda activate testenv | |
| pytest -rvsl ramp-database/ --cov=ramp_database --cov-report=term-missing --cov-report=xml --cov-append | |
| - name: Test ramp-utils | |
| run: | | |
| set -e | |
| conda activate testenv | |
| pytest -rvsl ramp-utils/ --cov=ramp_utils --cov-report=term-missing --cov-report=xml --cov-append | |
| - name: Test integration | |
| run: | | |
| set -e | |
| conda activate testenv | |
| bash ci_tools/actions/integration_test.sh | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: true | |
| verbose: true | |
| file: ./coverage.xml | |
| lint: | |
| name: lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: pip install flake8==6.0.0 black==22.3.0 | |
| - name: Run flake8 | |
| run: flake8 ramp-* | |
| - name: Run black | |
| run: black --check . |