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Wrap-up release v3.2.1 #81

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merged 11 commits into from
Jul 24, 2024
Merged

Wrap-up release v3.2.1 #81

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d65d6cc
add force / removal
fmalmeida Jun 10, 2024
597b235
update changelog
fmalmeida Jul 21, 2024
8149ced
update version and changelog
fmalmeida Jul 23, 2024
da112c0
add 'else' snippet
fmalmeida Jul 23, 2024
a20dcc4
get all other columns but the mapping ones in case they are not avail…
fmalmeida Jul 23, 2024
c321414
fix col selector
fmalmeida Jul 23, 2024
5ba04f8
update changelog
fmalmeida Jul 23, 2024
fecc989
Merge pull request #80 from fmalmeida/issue-79
fmalmeida Jul 23, 2024
5cd6b0d
Merge branch 'dev' of https://github.com/fmalmeida/MpGAP into issue-77
fmalmeida Jul 23, 2024
8809a40
Merge pull request #78 from fmalmeida/issue-77
fmalmeida Jul 23, 2024
8cbde6c
Update CHANGELOG.md
fmalmeida Jul 23, 2024
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2 changes: 1 addition & 1 deletion .zenodo.json
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Expand Up @@ -2,7 +2,7 @@
"description": "<p>MpGAP is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. It is an easy to use pipeline that adopts well known software for _de novo_ genome assembly of Illumina, Pacbio and Oxford Nanopore sequencing data through illumina only, long reads only or hybrid modes.</p>",
"license": "other-open",
"title": "fmalmeida/MpGAP: A generic multi-platform genome assembly pipeline",
"version": "v3.2",
"version": "v3.2.1",
"upload_type": "software",
"creators": [
{
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9 changes: 8 additions & 1 deletion markdown/CHANGELOG.md
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Expand Up @@ -2,7 +2,14 @@

The tracking for changes started in v2.

## v3.2 -- [2024-Mar-06]
## v3.2.1 -- [2024-Jul-24]

* [#77](https://github.com/fmalmeida/MpGAP/issues/77)
* Add cleanup to avoid `overwrite existing files` error in BUSCO when resuming a run.
* [#79](https://github.com/fmalmeida/MpGAP/issues/79)
* Add if-else in MultiQC module so that if Quast report has different set of columns.

## v3.2.0 -- [2024-Mar-06]

* Update unicyler to v0.5.0
* Adjust Pilon polishing module to select how many rounds of polishing to run. Default is 4.
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3 changes: 2 additions & 1 deletion modules/local/QualityAssessment/multiqc.nf
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2 changes: 2 additions & 0 deletions modules/local/QualityAssessment/quast.nf
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -109,5 +109,5 @@ manifest {
homePage = "https://github.com/fmalmeida/mpgap"
mainScript = "main.nf"
nextflowVersion = "!>=21.10.3"
version = "3.2"
version = "3.2.1"
}
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