Code

Sphinx#264

Code

Merged

BalzaniEdoardo merged 109 commits intodevelopmentflatironinstitute/nemos:developmentfrom sphinxflatironinstitute/nemos:sphinxCopy head branch name to clipboardNov 27, 2024

+7,545-5,253

Commits

Commits on Sep 23, 2024

• make files for sphinx

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• empty space needed after div to interpret markdown within block

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Commits on Nov 8, 2024

• start editing landing page

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Commits on Nov 11, 2024

• started changing docs

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Commits on Nov 12, 2024

• added title

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• improved ref

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• mreged dev

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• double ticks basis

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• double ticks glm

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• fixed examples

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• fixed examples

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• fixed examples

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• improved docstrings

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• improved docstrings

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Commits on Nov 13, 2024

• edited more docstrings

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• edited docstrings for observation models

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• added todos API

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Commits on Nov 14, 2024

• set docstrings for simulation

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• finished docstrings parsing

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• added MD files converted with jupytext

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• fixed image tutorial 0

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Commits on Nov 15, 2024

• fixed math

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• fixed background

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• edis to background

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• reformat files

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• fixed howto

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• finished howto, started tutorials

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• renamed api

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• renamed

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• fixed dark mode

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• fixed quickstart

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• finished glm note

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• edited obs models

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• finished dev notes

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Commits on Nov 16, 2024

• fixing some links

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• fixed all links

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• added logo flatiron white

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• switch logo in mode dark

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• add target

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• modified rtd

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• removed unsesd extension

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• adding lev 1 heading

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• linted

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• replaced link that was stuck

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• fixed tests

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• fixed doctests

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• removed commented conf

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• set non-interactive backend

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• fix rtd paths

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Commits on Nov 18, 2024

• smaller FI logo

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• removed "" on admonition title

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Commits on Nov 19, 2024

• Update docs/tutorials/plot_02_head_direction.md

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• fixed "next" for dev notes

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Commits on Nov 20, 2024

• removed jupytext +++

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• added image checks

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• try fixing item lists in rst in docstrings

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• remove footnotes css

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• potentially fix progress bar

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• priority to getting help

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• leftover admonition fix

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• remove logging

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• added ipythonwidgets

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• fixed links

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• Merge branch 'sphinx' of github.com:flatironinstitute/nemos into sphinx

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Commits on Nov 21, 2024

• added thumbnail for background

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• add images tutorials

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• add thumbnails tutorials

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• hide mpl inline

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• added all thumbnails

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• added warning ignore filter

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• added svgs for how to

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• modified svg

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• clear date

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• clear date

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• clear date

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• cleared date

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• removed svgs

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• reinserted save

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• mod gitignore

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• linted

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• debug rtd

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• add a prebuild debug

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• fix rtd

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• thumbnail added

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• change to save in assets

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• Revert "thumbnail added"

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• Revert "change to save in assets"

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• reverted to save to static

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Commits on Nov 22, 2024

• increase timeout

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• changed image

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• added ipython kernel

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• fixed progress bar

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• fix refs

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• removed bold from note

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• fixed alt

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• fixed admonitions

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• import tqdm.auto directly

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• some linting of the docstrings

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• linted

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• linted

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• added from future import annotations

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• added sphinx build to gitignore

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• copyright updated

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• fixed name

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Commits on Nov 25, 2024

• fixed error multiline

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• fixed rendering eqns

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• last fixes

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• fixed emojis

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Commits on Nov 27, 2024

• exclude site brain map

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