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fix forking issue with parallelism
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BalzaniEdoardo committed Oct 3, 2024
1 parent 3bd5532 commit 21ad02f
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Showing 2 changed files with 17 additions and 5 deletions.
12 changes: 12 additions & 0 deletions tests/conftest.py
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,8 @@
This module primarily serves as a utility for test configurations, setting up initial conditions,
and loading predefined parameters for testing various functionalities of the NeMoS library.
"""
import multiprocessing as mp


import jax
import jax.numpy as jnp
Expand All @@ -17,6 +19,16 @@
import nemos as nmo
import pynapple as nap


@pytest.fixture(scope="session", autouse=True)
def set_multiprocessing_method():
try:
mp.set_start_method('spawn', force=True)
except RuntimeError:
# Context has already been set, so ignore this error.
pass

# shut-off conversion warnings
nap.nap_config.suppress_conversion_warnings = True


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10 changes: 5 additions & 5 deletions tests/test_pipeline.py
Original file line number Diff line number Diff line change
Expand Up @@ -47,11 +47,11 @@ def test_sklearn_transformer_pipeline_cv(bas, poissonGLM_model_instantiation):
@pytest.mark.parametrize(
"bas",
[
basis.MSplineBasis(5),
# basis.MSplineBasis(5),
basis.BSplineBasis(5),
basis.CyclicBSplineBasis(5),
basis.RaisedCosineBasisLinear(5),
basis.RaisedCosineBasisLog(5),
# basis.CyclicBSplineBasis(5),
# basis.RaisedCosineBasisLinear(5),
# basis.RaisedCosineBasisLog(5),
],
)
def test_sklearn_transformer_pipeline_cv_multiprocess(
Expand All @@ -61,7 +61,7 @@ def test_sklearn_transformer_pipeline_cv_multiprocess(
bas = basis.TransformerBasis(bas)
pipe = pipeline.Pipeline([("basis", bas), ("fit", model)])
param_grid = dict(basis__n_basis_funcs=(3, 5, 10))
gridsearch = GridSearchCV(pipe, param_grid=param_grid, cv=3, n_jobs=3)
gridsearch = GridSearchCV(pipe, param_grid=param_grid, cv=3, n_jobs=3, error_score='raise')
gridsearch.fit(X[:, : bas._n_input_dimensionality] ** 2, y)


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