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@mortonjt mortonjt released this 08 Mar 14:25
· 26 commits to master since this release
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Learn about vigilant mode.

This is the latest release of DeepBLAST that enables strongly comparable structural alignments compared to existing structural aligners, without needing structural inputs. Multiple changes happened since the last iteration

  • We swapped out the Bepler LSTM pretrained model with ProTrans
  • CNN intermediate layers to estimate the BLOSUM matrices are used instead of MLP layers
  • Support for differentiable Smith-Waterman is in place
  • Compatibility with TM-vec to enable scalable remote homology search is in place
  • Distributed computing across multiple nodes and GPUs is enabled
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