hsp90 reweighting tests

flatironinstitute · Sep 14, 2023 · afa95c7 · afa95c7
1 parent 7bcbc8d
commit afa95c7
Show file tree

Hide file tree

Showing 8 changed files with 20,056 additions and 22 deletions.
diff --git a/Lukes_folder/cryoBIFE_test.ipynb b/Lukes_folder/cryoBIFE_test.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -39,7 +39,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -50,14 +50,15 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
     "s_vals = np.linspace(0, 1, 20)\n",
     "P_vals = np.zeros_like(s_vals)\n",
     "for idx in range(s_vals.shape[0]):\n",
-    "    P_vals[idx] = P(s_vals[idx])"
+    "    P_vals[idx] = P(s_vals[idx])\n",
+    "P_vals/=np.sum(P_vals)"
    ]
   },
   {
@@ -76,7 +77,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -135,7 +136,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -154,7 +155,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -193,7 +194,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -210,7 +211,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -340,7 +341,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {

diff --git a/Lukes_folder/hsp90_compute_posterior_matrix.ipynb b/Lukes_folder/hsp90_compute_posterior_matrix.ipynb
diff --git a/Lukes_folder/hsp90_neg_log_posterior_mat.npz b/Lukes_folder/hsp90_neg_log_posterior_mat.npz
diff --git a/Lukes_folder/hsp90_neg_log_posterior_mat.txt b/Lukes_folder/hsp90_neg_log_posterior_mat.txt
diff --git a/Lukes_folder/hsp90_posterior_mat.npz b/Lukes_folder/hsp90_posterior_mat.npz
diff --git a/Lukes_folder/hsp90_posterior_mat.txt b/Lukes_folder/hsp90_posterior_mat.txt
diff --git a/crybife_pdf.png b/crybife_pdf.png
diff --git a/ensemble_reweighting_pdf.png b/ensemble_reweighting_pdf.png