Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

refer to dataset_2_ground_truth in config files #57

Merged
merged 1 commit into from
Jul 18, 2024
Merged

refer to dataset_2_ground_truth in config files #57

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion config_files/config_distribution_to_distribution.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ metrics:
- corr
- bioem
- fsc
gt_metadata_fname: data/metadata.csv
gt_metadata_fname: data/dataset_2_ground_truth/metadata.csv
n_replicates: 30
n_pool_microstate: 5
replicate_fraction: 0.9
Expand Down
8 changes: 4 additions & 4 deletions config_files/config_map_to_map_distance_matrix.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,16 +2,16 @@ data:
n_pix: 224
psize: 2.146
submission:
fname: data/submission_0.pt
fname: data/dataset_2_ground_truth/submission_0.pt
volume_key: volumes
metadata_key: populations
label_key: id
ground_truth:
volumes: data/maps_gt_flat.pt
metadata: data/metadata.csv
volumes: data/dataset_2_ground_truth/maps_gt_flat.pt
metadata: data/dataset_2_ground_truth/metadata.csv
mask:
do: true
volume: data/mask_dilated_wide_224x224.mrc
volume: data/dataset_2_ground_truth/mask_dilated_wide_224x224.mrc
analysis:
metrics:
- l2
Expand Down
2 changes: 1 addition & 1 deletion config_files/config_plotting.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
gt_metadata: path/to/metadata.csv
gt_metadata: data/dataset_2_ground_truth/metadata.csv

map2map_results:
- path/to/map2map_results_1.pkl
Expand Down
Loading