updated paths with Ground_truth folder on osf and locally"

tests/config_files/test_config_distribution_to_distribution.yaml

@@ -1,7 +1,7 @@
 input_fname: tests/results/test_map_to_map_distance_matrix_submission_0.pkl
 metrics:
   - l2
-gt_metadata_fname: tests/data/test_metadata_10.csv
+gt_metadata_fname: tests/data/Ground_truth/test_metadata_10.csv
 n_replicates: 3
 n_pool_microstate: 2
 replicate_fraction: 0.9

tests/config_files/test_config_map_to_map.yaml

@@ -7,11 +7,11 @@ data:
     metadata_key: populations
     label_key: id
   ground_truth:
-    volumes: tests/data/test_maps_gt_flat_10.pt 
-    metadata: tests/data/test_metadata_10.csv 
+    volumes: tests/data/Ground_truth/test_maps_gt_flat_10.pt 
+    metadata: tests/data/Ground_truth/test_metadata_10.csv 
   mask: 
     do: true
-    volume: data/mask_dilated_wide_224x224.mrc
+    volume: data/Ground_truth/mask_dilated_wide_224x224.mrc
 analysis:
   metrics:
     - l2

tests/scripts/fetch_test_data.sh

@@ -1,8 +1,10 @@
 mkdir -p data/dataset_2_submissions tests/results tests/data/unprocessed_dataset_2_submissions/submission_x
 wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/dataset_2_submissions/test_submission_0_n8.pt?download=true -O tests/data/dataset_2_submissions/test_submission_0_n8.pt
-wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/test_maps_gt_flat_10.pt?download=true -O tests/data/test_maps_gt_flat_10.pt
-wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/test_metadata_10.csv?download=true -O tests/data/test_metadata_10.csv 
+wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/test_maps_gt_flat_10.pt?download=true -O tests/data/Ground_truth/test_maps_gt_flat_10.pt
+wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/test_metadata_10.csv?download=true -O tests/data/Ground_truth/test_metadata_10.csv 
+wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/1.mrc?download=true -O tests/data/Ground_truth/1.mrc 
+wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/mask_dilated_wide_224x224.mrc?download=true -O tests/data/Ground_truth/mask_dilated_wide_224x224.mrc 
 for FILE in 1.mrc 2.mrc 3.mrc 4.mrc populations.txt
 do
     wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/unprocessed_dataset_2_submissions/submission_x/${FILE}?download=true -O tests/data/unprocessed_dataset_2_submissions/submission_x/${FILE}
-done
+done