svd test

flatironinstitute · Jun 26, 2024 · b7813ce · b7813ce
1 parent 904e008
commit b7813ce
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Showing 2 changed files with 20 additions and 4 deletions.
diff --git a/tests/scripts/fetch_test_data.sh b/tests/scripts/fetch_test_data.sh
@@ -1,5 +1,6 @@
 mkdir -p tests/data/dataset_2_submissions data/dataset_2_submissions tests/results tests/data/unprocessed_dataset_2_submissions/submission_x tests/data/Ground_truth/ data/Ground_truth
 wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/dataset_2_submissions/test_submission_0_n8.pt?download=true -O tests/data/dataset_2_submissions/test_submission_0_n8.pt
+ln -s tests/data/dataset_2_submissions/test_submission_0_n8.pt tests/data/dataset_2_submissions/submission_0.pt # symlink for svd which needs submission_0.pt for filename
 wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/test_maps_gt_flat_10.pt?download=true -O tests/data/Ground_truth/test_maps_gt_flat_10.pt
 wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/test_metadata_10.csv?download=true -O tests/data/Ground_truth/test_metadata_10.csv 
 wget https://files.osf.io/v1/resources/8h6fz/providers/dropbox/tests/Ground_truth/1.mrc?download=true -O tests/data/Ground_truth/1.mrc 

diff --git a/tutorials/2_tutorial_svd.ipynb b/tutorials/2_tutorial_svd.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -12,7 +12,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -40,9 +40,24 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 3,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "c199472d76994ca7b2639a2709536f6d",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "FileChooser(path='/mnt/home/gwoollard', filename='', title='', show_hidden=False, select_desc='Select', change…"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
    "source": [
     "# Select path to SVD config file\n",
     "# An example of this file is available in the path ../config_files/config_svd.yaml\n",