Merge pull request #57 from flatironinstitute/iss33_osf_download_patch

refer to dataset_2_ground_truth in config files
flatironinstitute · Jul 18, 2024 · 82c6d8e · 82c6d8e
2 parents 27f5537 + 31f6883
commit 82c6d8e
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/config_files/config_distribution_to_distribution.yaml b/config_files/config_distribution_to_distribution.yaml
@@ -4,7 +4,7 @@ metrics:
   - corr
   - bioem
   - fsc
-gt_metadata_fname: data/metadata.csv
+gt_metadata_fname: data/dataset_2_ground_truth/metadata.csv
 n_replicates: 30
 n_pool_microstate: 5
 replicate_fraction: 0.9

diff --git a/config_files/config_map_to_map_distance_matrix.yaml b/config_files/config_map_to_map_distance_matrix.yaml
@@ -2,16 +2,16 @@ data:
   n_pix: 224
   psize: 2.146 
   submission:
-    fname: data/submission_0.pt
+    fname: data/dataset_2_ground_truth/submission_0.pt
     volume_key: volumes
     metadata_key: populations
     label_key: id
   ground_truth:
-    volumes: data/maps_gt_flat.pt 
-    metadata: data/metadata.csv 
+    volumes: data/dataset_2_ground_truth/maps_gt_flat.pt 
+    metadata: data/dataset_2_ground_truth/metadata.csv 
   mask: 
     do: true
-    volume: data/mask_dilated_wide_224x224.mrc
+    volume: data/dataset_2_ground_truth/mask_dilated_wide_224x224.mrc
 analysis:
   metrics:
     - l2

diff --git a/config_files/config_plotting.yaml b/config_files/config_plotting.yaml
@@ -1,4 +1,4 @@
-gt_metadata: path/to/metadata.csv
+gt_metadata: data/dataset_2_ground_truth/metadata.csv
 
 map2map_results:
   - path/to/map2map_results_1.pkl