unit test. should pass in about 1 min

flatironinstitute · Jun 20, 2024 · 22f7d45 · 22f7d45
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diff --git a/config_files/test_config_map_to_map_distance_matrix.yaml b/config_files/test_config_map_to_map_distance_matrix.yaml
@@ -0,0 +1,26 @@
+data:
+  n_pix: 224
+  psize: 2.146 
+  submission:
+    fname: data/submission_0.pt
+    volume_key: volumes
+    metadata_key: populations
+    label_key: id
+  ground_truth:
+    volumes: data/test_maps_gt_flat.pt 
+    metadata: data/test_metadata.csv 
+  mask: 
+    do: true
+    volume: data/mask_dilated_wide_224x224.mrc
+analysis:
+  metrics:
+    - l2
+    # - corr
+    # - bioem
+    # - fsc
+  chunk_size_submission: 80
+  chunk_size_gt: 190
+  normalize:
+    do: true
+    method: median_zscore
+output: results/test_map_to_map_distance_matrix_submission_0.pkl
diff --git a/tests/test_map_to_map.py → tests/test_map_to_map_distance_matrix.py b/tests/test_map_to_map.py → tests/test_map_to_map_distance_matrix.py