Add new logo images

fkmendes · Dec 8, 2023 · 73fea96 · 73fea96
1 parent e3f23c8
commit 73fea96
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Showing 28 changed files with 61 additions and 22 deletions.
diff --git a/README.rst b/README.rst
@@ -1 +1,6 @@
-# PhyloJunction
+.. image:: https://github.com/fkmendes/PhyloJunction/blob/main/docs/source/images/pj_logo_github.png
+
+   :align: right
+   :alt: PhyloJunction
+
+# PhyloJunction
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: b84ee9742b822b42d18013a9df99f29c
+config: 23d797eac05ac9a2e25cf7772429ed98
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/_static/css/pj_custom.css b/docs/build/html/_static/css/pj_custom.css
@@ -3,4 +3,12 @@
 }
 .eqno {
     float: right;
+}
+
+/* 
+`width:auto` was rendering 0px wide for .svg files
+https://stackoverflow.com/questions/59215996/how-to-add-a-logo-to-my-readthedocs-logo-rendering-at-0px-wide
+*/
+.wy-side-nav-search .wy-dropdown > a img.logo, .wy-side-nav-search > a img.logo {
+    width: 275px;
 }
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/index.html b/docs/build/html/index.html
@@ -27,7 +27,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="#" class="icon icon-home"> PhyloJunction
+            <a href="#">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/installing.html b/docs/build/html/installing.html
@@ -28,7 +28,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/modules.html b/docs/build/html/modules.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.calculation.html b/docs/build/html/phylojunction.calculation.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.data.html b/docs/build/html/phylojunction.data.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.distribution.html b/docs/build/html/phylojunction.distribution.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.html b/docs/build/html/phylojunction.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.inference.html b/docs/build/html/phylojunction.inference.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.inference.revbayes.html b/docs/build/html/phylojunction.inference.revbayes.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.interface.cmdbox.html b/docs/build/html/phylojunction.interface.cmdbox.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.interface.grammar.html b/docs/build/html/phylojunction.interface.grammar.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.interface.html b/docs/build/html/phylojunction.interface.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.pgm.html b/docs/build/html/phylojunction.pgm.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.plotting.html b/docs/build/html/phylojunction.plotting.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.readwrite.html b/docs/build/html/phylojunction.readwrite.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/phylojunction.utility.html b/docs/build/html/phylojunction.utility.html
@@ -26,7 +26,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/pjdoc/index.html b/docs/build/html/pjdoc/index.html
@@ -29,7 +29,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="../index.html" class="icon icon-home"> PhyloJunction
+            <a href="../index.html">
+            <img src="../_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/build/html/py-modindex.html b/docs/build/html/py-modindex.html
@@ -29,7 +29,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/build/html/search.html b/docs/build/html/search.html
@@ -29,7 +29,8 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> PhyloJunction
+            <a href="index.html">
+            <img src="_static/pj_logo_doc.svg" class="logo" alt="Logo"/>
           </a>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="#" method="get">

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -53,6 +53,11 @@ def setup(app):
 
 html_theme = "sphinx_rtd_theme"
 html_static_path = ['_static']
+html_logo = 'images/pj_logo_doc.svg'
+html_theme_options = {
+    'logo_only': True,
+    'display_version': False,
+}
 
 
 rst_prolog = """

diff --git a/docs/source/images/pj_logo_doc.svg b/docs/source/images/pj_logo_doc.svg
diff --git a/docs/source/images/pj_logo_github.png b/docs/source/images/pj_logo_github.png
diff --git a/src/phylojunction/interface/pysidegui/images/icons/pj_logo_icon.png b/src/phylojunction/interface/pysidegui/images/icons/pj_logo_icon.png