-
Notifications
You must be signed in to change notification settings - Fork 161
Stephan Kramer edited this page May 16, 2017
·
13 revisions
CX1 is Imperial's entry-level HPC cluster. These are the instructions for building and running Firedrake on CX1.
module load gcc
module load mpi
export I_MPI_CC=gcc
export I_MPI_CXX=g++
export I_MPI_F90='gfortran -I/apps/intel/2017/compilers_and_libraries_2017.0.098/linux/mpi/intel64/include/ilp64/gfortran/5.1.0'
export I_MPI_FC="$I_MPI_F90"
export I_MPI_F77="$I_MPI_F90"
export PETSC_CONFIGURE_OPTIONS=--download-fblaslapack
module load python/2.7.11
curl -O https://raw.githubusercontent.com/firedrakeproject/firedrake/master/scripts/firedrake-install
python firedrake-install --no-package-manager --honour-pythonpath
The following is a sample pbs script running the Helmholtz demo. (Don't forget to run make in the firedrake/src/firedrake/demos
directory before submitting):
#!/bin/bash
# Job name
#PBS -N helmholtz_demo
# Time required in hh:mm:ss
#PBS -l walltime=00:02:00
# Resource requirements
#PBS -l select=1:ncpus=4:mpiprocs=4:ompthreads=1:mem=15999Mb
# Files to contain standard error and standard output
#PBS -o stdout
#PBS -e stderr
# Mail notification
#PBS -m ae
#PBS -M [email protected]
echo Working Directory is $PBS_O_WORKDIR
cd $PBS_O_WORKDIR
rm -f stdout* stderr*
module load gcc
module load mpi
export I_MPI_CC=gcc
export I_MPI_CXX=g++
module load python/2.7.11
# Change the next line to wherever you put your firedrake/
source $HOME/src/firedrake/bin/activate
# Start time
echo Start time is `date` > date
mpiexec python $VIRTUAL_ENV/src/firedrake/demos/helmholtz/helmholtz.py
# End time
echo End time is `date` >> date
Building locally
Tips
- Running Firedrake tests with different subpackage branches
- Modifying and Rebuilding PETSc and petsc4py
- Vectorisation
- Debugging C kernels with
lldb
on MacOS - Parallel MPI Debugging with
tmux-mpi
,pdb
andgdb
- Parallel MPI Debugging with VSCode and
debugpy
- Modifying generated code
- Kernel profiling with LIKWID
- breakpoint() builtin not working
- Debugging pytest with multiple processing
Developers Notes
- Upcoming meeting 2024-08-21
- 2024-08-07
- 2024-07-24
- 2024-07-17
- 2024-07-10
- 2024-06-26
- 2024-06-19
- 2024-06-05
- 2024-05-29
- 2024-05-15
- 2024-05-08
- 2024-05-01
- 2024-04-28
- 2024-04-17
- 2024-04-10
- 2024-04-03
- 2024-03-27
- 2024-03-20
- 2024-03-06
- 2024-02-28
- 2024-02-28
- 2024-02-21
- 2024-02-14
- 2024-02-07
- 2024-01-31
- 2024-01-24
- 2024-01-17
- 2024-01-10
- 2023-12-13
- 2023-12-06
- 2023-11-29
- 2023-11-22
- 2023-11-15
- 2023-11-08
- 2023-11-01
- 2023-10-25
- 2023-10-18
- 2023-10-11
- 2023-10-04
- 2023-09-27
- 2023-09-20
- 2023-09-06
- 2023-08-30
- 2023-08-23
- 2023-07-12
- 2023-07-05
- 2023-06-21
- 2023-06-14
- 2023-06-07
- 2023-05-17
- 2023-05-10
- 2023-03-08
- 2023-02-22
- 2023-02-15
- 2023-02-08
- 2023-01-18
- 2023-01-11
- 2023-12-14
- 2022-12-07
- 2022-11-23
- 2022-11-16
- 2022-11-09
- 2022-11-02
- 2022-10-26
- 2022-10-12
- 2022-10-05
- 2022-09-28
- 2022-09-21
- 2022-09-14
- 2022-09-07
- 2022-08-25
- 2022-08-11
- 2022-08-04
- 2022-07-28
- 2022-07-21
- 2022-07-07
- 2022-06-30
- 2022-06-23
- 2022-06-16
- 2022-05-26
- 2022-05-19
- 2022-05-12
- 2022-05-05
- 2022-04-21
- 2022-04-07
- 2022-03-17
- 2022-03-03
- 2022-02-24
- 2022-02-10
- 2022-02-03
- 2022-01-27
- 2022-01-20
- 2022-01-13
- 2021-12-15
- 2021-12-09
- 2021-11-25
- 2021-11-18
- 2021-11-11
- 2021-11-04
- 2021-10-28
- 2021-10-21
- 2021-10-14
- 2021-10-07
- 2021-09-30
- 2021-09-23
- 2021-09-09
- 2021-09-02
- 2021-08-26
- 2021-08-18
- 2021-08-11
- 2021-08-04
- 2021-07-28
- 2021-07-21
- 2021-07-14
- 2021-07-07
- 2021-06-30
- 2021-06-23
- 2021-06-16
- 2021-06-09
- 2021-06-02
- 2021-05-19
- 2021-05-12
- 2021-05-05
- 2021-04-28
- 2021-04-21
- 2021-04-14
- 2021-04-07
- 2021-03-17
- 2021-03-10
- 2021-02-24
- 2021-02-17
- 2021-02-10
- 2021-02-03
- 2021-01-27
- 2021-01-20
- 2021-01-13
- 2021-01-06