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| # Set default behaviour, in case users don't have core.autocrlf set. | ||
| * text=auto | ||
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| # Whitespace | ||
| * whitespace=tab-in-indent,space-before-tab,trailing-space,tabwidth=2 | ||
| *.{py,pyx,pxd,pxi} whitespace=tab-in-indent,space-before-tab,trailing-space,tabwidth=4 | ||
| Makefile whitespace=space-before-tab,trailing-space,tabwidth=2 | ||
| pyop2/_version.py export-subst | ||
| firedrake/_version.py export-subst |
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@@ -96,15 +96,15 @@ jobs: | |
| . ../firedrake_venv/bin/activate | ||
| echo OMP_NUM_THREADS is "$OMP_NUM_THREADS" | ||
| echo OPENBLAS_NUM_THREADS is "$OPENBLAS_NUM_THREADS" | ||
| python -m pytest -v tests/test_0init.py | ||
| python -m pytest -v tests/firedrake/test_0init.py | ||
| python -m pytest \ | ||
| --durations=200 \ | ||
| --timeout=1800 \ | ||
| --timeout-method=thread \ | ||
| -o faulthandler_timeout=1860 \ | ||
| -n 12 --dist worksteal \ | ||
| --junit-xml=firedrake.xml \ | ||
| -sv tests | ||
| -sv tests/firedrake | ||
| timeout-minutes: 120 | ||
| - name: Publish Test Report | ||
| uses: mikepenz/[email protected] | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,129 @@ | ||
| name: Pip install Firedrake | ||
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|
||
| on: | ||
| # Push to master or PR | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
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|
||
| concurrency: | ||
| # Cancels jobs running if new commits are pushed | ||
| group: > | ||
| ${{ github.workflow }}- | ||
| ${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| jobs: | ||
| build: | ||
| name: "Build Firedrake using pip" | ||
| runs-on: ubuntu-latest | ||
| container: | ||
| image: firedrakeproject/firedrake-env:latest | ||
| options: --user root | ||
| defaults: | ||
| run: | ||
| shell: bash | ||
| working-directory: /home/firedrake | ||
| strategy: | ||
| # Don't immediately kill real if complex fails and vice versa. | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - scalar-type: real | ||
| petsc_arch: default | ||
| - scalar-type: complex | ||
| petsc_arch: complex | ||
| env: | ||
| # PETSC_DIR, HDF5_DIR and MPICH_DIR are set inside the docker image | ||
| FIREDRAKE_CI_TESTS: 1 | ||
| PYOP2_CI_TESTS: 1 | ||
| PETSC_ARCH: ${{ matrix.petsc_arch }} | ||
| OMP_NUM_THREADS: 1 | ||
| OPENBLAS_NUM_THREADS: 1 | ||
| RDMAV_FORK_SAFE: 1 | ||
| steps: | ||
| - name: Cleanup | ||
| if: ${{ always() }} | ||
| run: rm -rf pip_venv | ||
|
|
||
| - name: Create a venv | ||
| run: | | ||
| python3 -m venv pip_venv | ||
| ln -s /__w/firedrake/firedrake/src pip_venv/ | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| path: src/firedrake | ||
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|
||
| - name: Install libsupermesh | ||
| run: | | ||
| source pip_venv/bin/activate | ||
| python -m pip install 'rtree>=1.2' | ||
| cd pip_venv/src | ||
| git clone https://github.com/firedrakeproject/libsupermesh.git | ||
| mkdir -p libsupermesh/build | ||
| cd libsupermesh/build | ||
| cmake .. \ | ||
| -DBUILD_SHARED_LIBS=ON \ | ||
| -DCMAKE_INSTALL_PREFIX="$VIRTUAL_ENV" \ | ||
| -DMPI_C_COMPILER="$MPICH_DIR/mpicc" \ | ||
| -DMPI_CXX_COMPILER="$MPICH_DIR/mpicxx" \ | ||
| -DMPI_Fortran_COMPILER="$MPICH_DIR/mpif90" \ | ||
| -DCMAKE_Fortran_COMPILER="$MPICH_DIR/mpif90" \ | ||
| -DMPIEXEC_EXECUTABLE="$MPICH_DIR/mpiexec" | ||
| make | ||
| make install | ||
| - name: Pip install | ||
| run: | | ||
| source pip_venv/bin/activate | ||
| cd pip_venv/src | ||
| export CC="$MPICH_DIR/mpicc" | ||
| export CXX="$MPICH_DIR/mpicxx" | ||
| export MPICC="$MPICH_DIR/mpicc" | ||
| export MPI_HOME="$PETSC_DIR/packages" | ||
| pip install \ | ||
| --log=firedrake-install.log \ | ||
| --no-binary mpi4py,h5py \ | ||
| -v -e './firedrake[test]' | ||
| - name: Add mpiexec to the venv and install timeout | ||
| run: | | ||
| source pip_venv/bin/activate | ||
| cat << EOF > "$VIRTUAL_ENV/bin/mpiexec" | ||
| #!/bin/bash | ||
| "$MPICH_DIR"/mpiexec "\$@" | ||
| EOF | ||
| chmod +x "$VIRTUAL_ENV"/bin/mpiexec | ||
| pip install -U pytest-timeout | ||
| - name: Run Firedrake smoke tests | ||
| run: | | ||
| source pip_venv/bin/activate | ||
| cd pip_venv/src/firedrake | ||
| pytest -v tests/firedrake/test_0init.py | ||
| pytest \ | ||
| --durations=200 \ | ||
| --timeout=1800 \ | ||
| --timeout-method=thread \ | ||
| -o faulthandler_timeout=1860 \ | ||
| -n 12 --dist worksteal \ | ||
| --junit-xml=firedrake.xml \ | ||
| -sv tests/firedrake/regression -k "poisson_strong or stokes_mini or dg_advection" | ||
| timeout-minutes: 120 | ||
|
|
||
| - name: Publish Test Report | ||
| uses: mikepenz/[email protected] | ||
| if: ${{ always() && ( github.ref != 'refs/heads/master') }} | ||
| with: | ||
| report_paths: '/home/firedrake/pip_venv/src/firedrake/firedrake.xml' | ||
| comment: true | ||
| check_name: "Firedrake ${{ matrix.scalar-type }}" | ||
| updateComment: true | ||
| flaky_summary: true | ||
|
|
||
| - name: Cleanup | ||
| # Belt and braces: clean up before and after the run. | ||
| if: ${{ always() }} | ||
| run: rm -rf pip_venv |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,119 @@ | ||
| name: PyOP2 | ||
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||
| # Trigger the workflow on push or pull request, | ||
| # but only for the master branch | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
| branches: | ||
| - master | ||
|
|
||
| jobs: | ||
| test: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| # Don't immediately kill all if one Python version fails | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: ['3.10', '3.11', '3.12', '3.13'] | ||
| env: | ||
| CC: mpicc | ||
| PETSC_DIR: ${{ github.workspace }}/petsc | ||
| PETSC_ARCH: default | ||
| RDMAV_FORK_SAFE: 1 | ||
| PYOP2_CI_TESTS: 1 | ||
| timeout-minutes: 60 | ||
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||
| steps: | ||
| - name: Install system dependencies | ||
| shell: bash | ||
| run: | | ||
| sudo apt update | ||
| sudo apt install build-essential mpich libmpich-dev \ | ||
| libblas-dev liblapack-dev gfortran libhwloc-dev libfabric-dev | ||
| - name: Set correct Python version | ||
| uses: actions/setup-python@v5 | ||
| id: setup-python | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| # By default setup-python pollutes the environment in such a way that virtual | ||
| # environments cannot be used. This prevents us from building libsupermesh because | ||
| # it relies on having rtree installed into a venv. | ||
| # https://github.com/actions/setup-python/issues/851 | ||
| # https://github.com/actions/setup-python/blob/main/docs/advanced-usage.md#using-update-environment-flag | ||
| update-environment: false | ||
|
|
||
| - name: Create virtual environment | ||
| shell: bash | ||
| run: | | ||
| ${{ steps.setup-python.outputs.python-path }} -m venv venv | ||
| - name: Clone PETSc | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| repository: firedrakeproject/petsc | ||
| path: ${{ env.PETSC_DIR }} | ||
|
|
||
| - name: Build and install PETSc | ||
| shell: bash | ||
| working-directory: ${{ env.PETSC_DIR }} | ||
| run: | | ||
| ./configure \ | ||
| --download-hdf5 \ | ||
| --with-debugging=1 \ | ||
| --with-shared-libraries=1 \ | ||
| --with-c2html=0 \ | ||
| --with-fortran-bindings=0 | ||
| make | ||
| - name: Install libsupermesh | ||
| shell: bash | ||
| run: | | ||
| source venv/bin/activate | ||
| python -m pip install 'rtree>=1.2' | ||
| git clone https://github.com/firedrakeproject/libsupermesh.git | ||
| mkdir -p libsupermesh/build | ||
| cd libsupermesh/build | ||
| cmake .. \ | ||
| -DBUILD_SHARED_LIBS=ON \ | ||
| -DCMAKE_INSTALL_PREFIX="$VIRTUAL_ENV" \ | ||
| -DMPI_C_COMPILER=mpicc \ | ||
| -DMPI_CXX_COMPILER=mpicxx \ | ||
| -DMPI_Fortran_COMPILER=mpif90 \ | ||
| -DCMAKE_Fortran_COMPILER=mpif90 \ | ||
| -DMPIEXEC_EXECUTABLE=mpiexec | ||
| make | ||
| make install | ||
| - name: Checkout PyOP2 | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| path: PyOP2 | ||
|
|
||
| - name: Install PyOP2 dependencies | ||
| shell: bash | ||
| working-directory: PyOP2 | ||
| run: | | ||
| source ../venv/bin/activate | ||
| python -m pip install -U pip | ||
| python -m pip install -U pytest-timeout | ||
| - name: Install PyOP2 | ||
| shell: bash | ||
| working-directory: PyOP2 | ||
| run: | | ||
| source ../venv/bin/activate | ||
| python -m pip install -v ".[test]" | ||
| - name: Run tests | ||
| shell: bash | ||
| working-directory: PyOP2 | ||
| run: | | ||
| source ../venv/bin/activate | ||
| # Running parallel test cases separately works around a bug in pytest-mpi | ||
| pytest -k "not parallel" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | ||
| mpiexec -n 3 pytest -k "parallel[3]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | ||
| timeout-minutes: 10 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,2 +1,5 @@ | ||
| include versioneer.py | ||
| include firedrake/_version.py | ||
| recursive-include pyop2 *.c | ||
| include pyop2/_version.py | ||
|
|
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