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ensure that SPM12 is on the path
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robertoostenveld committed Mar 17, 2024
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Expand Up @@ -124,8 +124,9 @@ CRITICAL STEP To correctly fuse the MRI and CT scans at a later step, accuracy i
cfg.coordsys = 'ctf';
ct_ctf = ft_volumerealign(cfg, ct);

**12**) Automatically convert the CT's coordinate system into an approximation of the ACPC coordinate system, the same system the anatomical MRI was aligned to.
**12**) Automatically convert the CT's coordinate system into an approximation of the ACPC coordinate system, the same system the anatomical MRI was aligned to. The call to **[ft_hastoolbox](/reference/utilities/ft_hastoolbox)** ensures that the required SPM toolbox is on the path.

ft_hastoolbox('spm12', 1);
ct_acpc = ft_convert_coordsys(ct_ctf, 'acpc');

### Fusion of the CT with the MRI
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