Skip to content

Commit

Permalink
fixed spelling
Browse files Browse the repository at this point in the history
  • Loading branch information
robertoostenveld committed Jan 19, 2024
1 parent 21425d7 commit 3148ce3
Show file tree
Hide file tree
Showing 2 changed files with 7 additions and 2 deletions.
5 changes: 5 additions & 0 deletions assets/wordlist-ignore.txt
Original file line number Diff line number Diff line change
Expand Up @@ -756,6 +756,7 @@ HDR
HED
HEOG
HFC
HFC
HGP
HGPs
HHb
Expand Down Expand Up @@ -1675,6 +1676,7 @@ SPI
SPM
SPM's
SPMD
SQUIDs
SSAEP
SSD
SSEC
Expand Down Expand Up @@ -2677,6 +2679,8 @@ crossvalidate
crowdsourced
crsspctrm
crtl
cryocooler
cryocooling
csc
csd
csddimord
Expand Down Expand Up @@ -3381,6 +3385,7 @@ het
hexahedra
hexahedral
hexahedron
hfc
hfig
hgp
hh
Expand Down
4 changes: 2 additions & 2 deletions tutorial/preprocessing_opm.md
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ OPMs are individual sensors that do not need a dewar for the cryocooling. Due to

An important difference between OPMs and most SQUID-based MEG systems is that OPMs are magnetometers, whereas most conventional MEG systems consist of (mostly) gradiometers. Gradiometers are designed to suppress the environmental field, as explained in [this video](https://youtu.be/CPj4jJACeIs?t=350). Magnetometers see more of the environmental noise and consequently the static earth magnetic field can also become visible as noise due to (small) movements. Movements of the head, and thereby of the sensors, cause the OPMs to move through the residual earth magnetic field in the MSR. As head movements are relatively slow, this results in low-frequency noise.

This tutorial focusses on preprocessing of OPM data and some simple analyses. Following the computation of the ERFs, you could you could in principle continue with source reconstruction: the early components of the median nerve lend themselves well to dipole fitting. However, since no coregistration was performed between the head and sensors, it is not possible to construct an accurate headmodel or to plot the sources on top of the anatopmical MRI of the participant.
This tutorial focusses on preprocessing of OPM data and some simple analyses. Following the computation of the ERFs, you could you could in principle continue with source reconstruction: the early components of the median nerve lend themselves well to dipole fitting. However, since no coregistration was performed between the head and sensors, it is not possible to construct an accurate headmodel or to plot the sources on top of the anatomical MRI of the participant.

Most follow-up analyses are not specific to OPMs and are demonstrated in other tutorials. Detecting and dealing with large movements and suppressing environmental noise in the OPM magnetometers, for example using homogenous field compensation (HFC) with **[ft_denoise_hfc](/reference/ft_denoise_hfc)**, will also not be covered in this tutorial.

Expand All @@ -27,7 +27,7 @@ FIXME: give the dataset a name and description in the FAQ.

OPM recordings were done using a FieldLine v2 system comprised of 8 OPMs sensitive in the radial (or axial) direction. The OPMs were placed in a FieldLine alpha-1 helmet, which allows them to be slide inwards, touching the scalp surface.

The participant received electrical stimuation of the median nerve of the right hand. We therefore expect an N20 component over the left somatosensory cortex. The median nerve stimulation protocol was repeated fthree times, with different positions of the OPM sensors. An Excel sheet was used to document the mapping of which sensor (or channel) was placed where.
The participant received electrical stimulation of the median nerve of the right hand. We therefore expect an N20 component over the left somatosensory cortex. The median nerve stimulation protocol was repeated three times, with different positions of the OPM sensors. An Excel sheet was used to document the mapping of which sensor (or channel) was placed where.

In the second part of this tutorial we will compare empty room recordings to recordings with a participant to compare the background environmental noise and the physiological and movement-related noise that is introduced by the participant.

Expand Down

0 comments on commit 3148ce3

Please sign in to comment.