updated tags and see also

fieldtrip · Sep 24, 2024 · 1c4d8ea · 1c4d8ea
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diff --git a/_includes/seealso b/_includes/seealso
@@ -1,5 +1,6 @@
 <ul>
   {% for p in site.pages %}
+  {% if include.category  == nil or include.category  == "" or p.category contains include.category  %}
   {% if include.tag  == nil or include.tag  == "" or p.tags contains include.tag  %}
   {% if include.tag1 == nil or include.tag1 == "" or p.tags contains include.tag1 %}
   {% if include.tag2 == nil or include.tag2 == "" or p.tags contains include.tag2 %}
@@ -21,5 +22,6 @@
   {% endif %}
   {% endif %}
   {% endif %}
+  {% endif %}
   {% endfor %}
 </ul>
diff --git a/development/module/connectivity.md b/development/module/connectivity.md
@@ -66,4 +66,4 @@ The literature references to the implemented methods are given [here](/reference
 
 See also these tutorials:
 
-{% include seealso tag1="tutorial" tag2="connectivity" %}
+{% include seealso category="tutorial" tag1="connectivity" %}
diff --git a/development/module/forward.md b/development/module/forward.md
@@ -166,14 +166,14 @@ The forward module functions are written such that they operate correctly if all
 
 The literature references to the implemented methods are given [here](/references_to_implemented_methods).
 
-### Frequently asked questions about forward and inverse modeling:
+### Frequently asked questions on forward and inverse modeling
 
-{% include seealso tag1="faq" tag2="source" %}
+{% include seealso category="faq" tag1="source" %}
 
-### Example material for forward and inverse modeling:
+### Example material on forward and inverse modeling
 
-{% include seealso tag1="example" tag2="source" %}
+{% include seealso category="example" tag1="source" %}
 
-### Tutorial material for forward and inverse modeling:
+### Tutorial material on forward and inverse modeling
 
-{% include seealso tag1="tutorial" tag2="source" %}
+{% include seealso category="tutorial" tag1="source" %}
diff --git a/development/module/inverse.md b/development/module/inverse.md
@@ -79,14 +79,14 @@ Most functions have additional optional input arguments that are specified as ke
 
 The literature references to the implemented methods are given [here](/references_to_implemented_methods).
 
-### Frequently asked questions about forward and inverse modeling:
+### See also these tutorials
 
-{% include seealso tag1="faq" tag2="source" %}
+{% include seealso category="tutorial" tag1="source" %}
 
-### Example material for forward and inverse modeling:
+### See also these frequently asked questions
 
-{% include seealso tag1="example" tag2="source" %}
+{% include seealso category="faq" tag1="source" %}
 
-### Tutorial material for forward and inverse modeling:
+### See also these examples
 
-{% include seealso tag1="tutorial" tag2="source" %}
+{% include seealso category="example" tag1="source" %}
diff --git a/development/module/qsub.md b/development/module/qsub.md
@@ -17,4 +17,4 @@ This toolbox has been developed as part of the FieldTrip toolbox, but can be use
 
 ## Frequently asked questions about distributed computing using this toolbox
 
-{% include seealso tag1="faq" tag2="qsub" %}
+{% include seealso category="faq" tag1="qsub" %}
diff --git a/development/project/consistency.md b/development/project/consistency.md
@@ -8,7 +8,7 @@ title: Check the consistency between the documentation and the implementations
 
 ## Objectives
 
-- the reference documentation should be included in the m-files (i.e. "help function_name")
+- the reference documentation should be included in the m-files (i.e., `help functionname`)
 - the documentation should be complete w.r.t. the underlying implementation
 - the documentation should be up-to-date, and should be easily kept up-to-date
 - the structure between the functions should become more transparent

diff --git a/development/project/nutmeg.md b/development/project/nutmeg.md
@@ -1,7 +1,7 @@
 ---
 title: Integration with NUTMEG
 redirect_from:
-- /development/nutmeg/
+  - /development/nutmeg/
 ---
 
 {% include /shared/development/warning.md %}

diff --git a/development/project/spike.md b/development/project/spike.md
@@ -15,7 +15,7 @@ The following steps have been don
 - test and start to use svn (done)
 - add functions (done)
 - check code duplication (done)
-- check reference doc, i.e. "help functionname" (done)
+- check reference doc, i.e., `help functionname` (done)
 - move to fieldtrip/contrib/spike
 
 The following steps still need some wor

diff --git a/development/realtime.md b/development/realtime.md
@@ -19,11 +19,11 @@ The page [scratchpad](/development/realtime/scratchpad) contains some loose ends
 
 ### Frequently asked questions
 
-{% include seealso tag1="faq" tag2="realtime" %}
+{% include seealso category="faq" tag1="realtime" %}
 
 ### Example scripts
 
-{% include seealso tag1="example" tag2="realtime" %}
+{% include seealso category="example" tag1="realtime" %}
 
 ### General tips and tricks
 

diff --git a/development/realtime/arduino.md b/development/realtime/arduino.md
@@ -90,7 +90,6 @@ The purpose of this device is to demonstrate that something can be controlled. I
 It is based on a ~~[3V3 Arduino Pro Mini](http://arduino.cc/en/Main/ArduinoBoardProMini)~~ [5V Arduino Mini](http://arduino.cc/en/Main/ArduinoBoardMini).
 
 - SPI: 10 (SS), 11 (MOSI), 12 (MISO), 13 (SCK)
-
 - External Interrupts: 2 and 3 (?)
 
 Wireless connectivity is provided by a [RFM12B](https://www.sparkfun.com/products/9582) module and uses this [library](http://jeelabs.net/pub/docs/jeelib/RF12_8cpp.html).
@@ -100,5 +99,4 @@ Wireless connectivity is provided by a [RFM12B](https://www.sparkfun.com/product
 ## See also
 
 - [development/realtime/modulareeg](/development/realtime/modulareeg) for the bluetooth OpenEEG interface
-
 - [here on GitHub](https://github.com/fieldtrip/fieldtrip/tree/master/realtime/src/arduino) for the Arduino specific source code
diff --git a/discussion_list.md b/discussion_list.md
@@ -23,6 +23,6 @@ You can browse the archived contributions to the discussion list [here](http://m
 
 {% include searchlistarchive %}
 
-## See also
+## See also these frequently asked questions
 
-{% include seealso tag1="faq" tag2="email" %}
+{% include seealso category="faq" tag1="email" %}
diff --git a/example.md b/example.md
@@ -60,7 +60,7 @@ See also the [tutorials](/tutorial) and [frequently asked questions](/faq).
 - [Fit a dipole to the tactile ERF after mechanical stimulation](/example/dipolefit_somatosensory_erf)
 - [How to create a head model if you do not have an individual MRI](/example/fittemplate)
 - [Localizing the sources underlying the difference in event-related fields](/example/difference_erf)
-- [Make leadfields using different headmodels](/example/make_leadfields_using_different_headmodels)
+- [Make MEG leadfields using different headmodels](/example/make_leadfields_using_different_headmodels)
 - [Read neuromag .fif mri and create a MNI-aligned single-shell head model](/example/neuromag_aligned2mni)
 - [Symmetric dipole pairs for beamforming](/example/symmetry)
 - [Testing BEM created lead fields](/example/testing_bem_created_leadfields)

diff --git a/example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa.md b/example/apply_clusterrandanalysis_on_tfrs_of_power_that_were_computed_with_besa.md
@@ -1,6 +1,7 @@
 ---
 title: Apply non-parametric statistics with clustering on TFRs of power that were computed with BESA
-tags: [example, statistics, freq, cluster]
+category: example
+tags: [statistics, freq, cluster]
 ---
 
 # Apply non-parametric statistics with clustering on TFRs of power that were computed with BESA

diff --git a/example/bids.md b/example/bids.md
@@ -1,6 +1,7 @@
 ---
 title: BIDS - the brain imaging data structure
-tags: [example, bids, sharing]
+category: example
+tags: [bids, sharing]
 ---
 
 # BIDS - the brain imaging data structure

diff --git a/example/bids_audio.md b/example/bids_audio.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example audio dataset for sharing in BIDS
-tags: [example, bids, sharing, audio]
+category: example
+tags: [bids, sharing, audio]
 ---
 
 # Converting an example audio dataset for sharing in BIDS

diff --git a/example/bids_behavioral.md b/example/bids_behavioral.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example behavioral dataset for sharing in BIDS
-tags: [example, bids, sharing, behavioral]
+category: example
+tags: [bids, sharing, behavioral]
 ---
 
 # Converting an example behavioral dataset for sharing in BIDS

diff --git a/example/bids_eeg.md b/example/bids_eeg.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example EEG dataset for sharing in BIDS
-tags: [example, bids, sharing]
+category: example
+tags: [bids, sharing]
 ---
 
 # Converting an example EEG dataset for sharing in BIDS

diff --git a/example/bids_emg.md b/example/bids_emg.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example EMG dataset for sharing in BIDS
-tags: [example, bids, sharing, emg]
+category: example
+tags: [bids, sharing, emg]
 ---
 
 # Converting an example EMG dataset for sharing in BIDS

diff --git a/example/bids_eyetracker.md b/example/bids_eyetracker.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example eyetracker dataset for sharing in BIDS
-tags: [example, bids, sharing, eyelink, smi, tobii]
+category: example
+tags: [bids, sharing, eyelink, smi, tobii]
 ---
 
 # Converting an example eye tracker dataset for sharing in BIDS

diff --git a/example/bids_meg.md b/example/bids_meg.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example MEG dataset for sharing in BIDS
-tags: [example, bids, sharing, meg, ctf]
+category: example
+tags: [bids, sharing, meg, ctf]
 ---
 
 # Converting an example MEG dataset for sharing in BIDS

diff --git a/example/bids_motion.md b/example/bids_motion.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example motion tracking dataset for sharing in BIDS
-tags: [example, bids, sharing, motion, qualisys, optotrak, xsens]
+category: example
+tags: [bids, sharing, motion, qualisys, optotrak, xsens]
 ---
 
 # Converting an example motion tracking dataset for sharing in BIDS

diff --git a/example/bids_mous.md b/example/bids_mous.md
@@ -1,6 +1,7 @@
 ---
 title: Converting the combined MEG/fMRI MOUS dataset for sharing in BIDS
-tags: [example, bids, sharing, anonymize]
+category: example
+tags: [bids, sharing, anonymize]
 ---
 
 # Converting the combined MEG/fMRI MOUS dataset for sharing in BIDS

diff --git a/example/bids_nirs.md b/example/bids_nirs.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example NIRS dataset for sharing in BIDS
-tags: [example, bids, sharing, nirs, artinis, homer, snirf]
+category: example
+tags: [bids, sharing, nirs, artinis, homer, snirf]
 ---
 
 # Converting an example NIRS dataset for sharing in BIDS

diff --git a/example/bids_pom.md b/example/bids_pom.md
@@ -1,6 +1,7 @@
 ---
 title: Combining simultaneous recordings in BIDS
-tags: [example, bids, sharing]
+category: example
+tags: [bids, sharing]
 ---
 
 # Combining simultaneous recordings in BIDS

diff --git a/example/bids_video.md b/example/bids_video.md
@@ -1,6 +1,7 @@
 ---
 title: Converting an example video dataset for sharing in BIDS
-tags: [example, bids, sharing, video]
+category: example
+tags: [bids, sharing, video]
 ---
 
 # Converting an example video dataset for sharing in BIDS

diff --git a/example/biosemi.md b/example/biosemi.md
@@ -1,6 +1,7 @@
 ---
 title: Example analysis pipeline for Biosemi data
-tags: [example, eeg, dataformat, biosemi, bdf]
+category: example
+tags: [eeg, dataformat, biosemi, bdf]
 ---
 
 # Example analysis pipeline for Biosemi data

diff --git a/example/checkconfig.md b/example/checkconfig.md
@@ -1,6 +1,7 @@
 ---
 title: How to use ft_checkconfig
-tags: [example, cfg]
+category: example
+tags: [cfg]
 ---
 
 # How to use ft_checkconfig

diff --git a/example/coherence_snr.md b/example/coherence_snr.md
@@ -1,6 +1,7 @@
 ---
 title: Effect of SNR on Coherence
-tags: [example, freq, coherence]
+category: example
+tags: [freq, coherence]
 ---
 
 # Effect of SNR on Coherence

diff --git a/example/combined_eeg_and_meg_source_reconstruction.md b/example/combined_eeg_and_meg_source_reconstruction.md
@@ -1,6 +1,7 @@
 ---
 title: Combined EEG and MEG source reconstruction
-tags: [example, eeg, meg, headmodel, source]
+category: example
+tags: [eeg, meg, headmodel, source]
 ---
 
 # Combined EEG and MEG source reconstruction

diff --git a/example/combineplanar_pipelineorder.md b/example/combineplanar_pipelineorder.md
@@ -1,6 +1,7 @@
 ---
 title: The correct pipeline order for combining planar MEG channels
-tags: [example, planar, gradient, combineplanar]
+category: example
+tags: [planar, gradient, combineplanar]
 ---
 
 # The correct pipeline order for combining planar MEG channels

diff --git a/example/common_filters_in_beamforming.md b/example/common_filters_in_beamforming.md
@@ -1,6 +1,7 @@
 ---
 title: Common filters in beamforming
-tags: [example, meg, freq, source, fixme]
+category: example
+tags: [meg, freq, source, fixme]
 ---
 
 # Common filters in beamforming

diff --git a/example/compute_forward_simulated_data.md b/example/compute_forward_simulated_data.md
@@ -1,6 +1,7 @@
 ---
 title: Compute forward simulated data using ft_dipolesimulation
-tags: [example, eeg, source, headmodel, dipole, simulation]
+category: example
+tags: [eeg, source, headmodel, dipole, simulation]
 ---
 
 # Compute forward simulated data using ft_dipolesimulation

diff --git a/example/compute_forward_simulated_data_and_apply_a_beamformer_scan.md b/example/compute_forward_simulated_data_and_apply_a_beamformer_scan.md
@@ -1,6 +1,7 @@
 ---
 title: Compute forward simulated data and apply a beamformer scan
-tags: [example, meg, source, dipole]
+category: example
+tags: [meg, source, dipole]
 ---
 
 # Compute forward simulated data and apply a beamformer scan

diff --git a/example/compute_forward_simulated_data_and_apply_a_dipole_fit.md b/example/compute_forward_simulated_data_and_apply_a_dipole_fit.md
@@ -1,6 +1,7 @@
 ---
 title: Compute forward simulated data and apply a dipole fit
-tags: [example, eeg, source, dipole]
+category: example
+tags: [eeg, source, dipole]
 ---
 
 # Compute forward simulated data and apply a dipole fit

diff --git a/example/compute_leadfield.md b/example/compute_leadfield.md
@@ -1,6 +1,7 @@
 ---
 title: Compute forward simulated data with the low-level ft_compute_leadfield
-tags: [example, eeg, source, headmodel, dipole, simulation]
+category: example
+tags: [eeg, source, headmodel, dipole, simulation]
 ---
 
 # Compute forward simulated data with the low-level ft_compute_leadfield

diff --git a/example/connectivity_conditional_granger.md b/example/connectivity_conditional_granger.md
@@ -1,6 +1,7 @@
 ---
 title: Conditional Granger causality in the frequency domain
-tags: [example, freq, connectivity, granger]
+category: example
+tags: [freq, connectivity, granger]
 ---
 
 # Conditional Granger causality in the frequency domain

diff --git a/example/coregistration_quality_control.md b/example/coregistration_quality_control.md
@@ -1,6 +1,7 @@
 ---
 title: Check the quality of the anatomical coregistration
-tags: [example, source, mri, plotting]
+category: example
+tags: [source, mri, plotting]
 ---
 
 # Check the quality of the anatomical coregistration

diff --git a/example/correlation_analysis_in_fmri_data.md b/example/correlation_analysis_in_fmri_data.md
@@ -1,6 +1,7 @@
 ---
 title: Correlation analysis of fMRI data
-tags: [example, fmri, raw, freq, coherence]
+category: example
+tags: [fmri, raw, freq, coherence]
 ---
 
 # Correlation analysis of fMRI data

diff --git a/example/crossfreq.md b/example/crossfreq.md
@@ -1,6 +1,7 @@
 ---
 title: Cross-frequency analysis
-tags: [example, freq]
+category: example
+tags: [freq]
 ---
 
 # Cross-frequency analysis

diff --git a/...etect_the_muscle_activity_in_an_emg_channel_and_use_that_as_trial_definition.md b/...etect_the_muscle_activity_in_an_emg_channel_and_use_that_as_trial_definition.md
@@ -1,6 +1,7 @@
 ---
 title: Detect the muscle activity in an EMG channel and use that as trial definition
-tags: [example, trialfun, emg, preprocessing]
+category: example
+tags: [trialfun, emg, preprocessing]
 ---
 
 # Detect the muscle activity in an EMG channel and use that as trial definition
Original file line number	Diff line number	Diff line change
Expand Up		@@ -66,4 +66,4 @@ The literature references to the implemented methods are given [here](/reference

		See also these tutorials:

		{% include seealso tag1="tutorial" tag2="connectivity" %}
		{% include seealso category="tutorial" tag1="connectivity" %}
Original file line number	Diff line number	Diff line change
Expand Up		@@ -17,4 +17,4 @@ This toolbox has been developed as part of the FieldTrip toolbox, but can be use

		## Frequently asked questions about distributed computing using this toolbox

		{% include seealso tag1="faq" tag2="qsub" %}
		{% include seealso category="faq" tag1="qsub" %}